genome.fa.s47.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold47
Parameters: 2 7 7 80 10 50 1000
Length:  2157611

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  15  of  15  ( 1735 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2050228--2050547	43	7.0	43	80	10	361	25	25	17	30	1.97
2050501--2051009	49	9.8	55	75	13	303	25	23	15	34	1.95
2050501--2050651	55	2.8	53	84	3	196	25	24	15	34	1.94
2050669--2050949	49	5.9	49	80	11	334	25	23	17	32	1.97
2050550--2050771	116	1.9	119	81	5	270	24	24	14	36	1.93
2050724--2050905	43	4.1	43	82	8	238	26	24	18	30	1.97
2050675--2050949	92	3.0	92	92	1	460	26	23	17	32	1.97
2050320--2051094	358	2.2	358	94	0	1352	24	24	15	34	1.95
2065269--2065310	21	2.0	22	85	4	59	38	4	2	54	1.34
2067884--2067917	17	2.0	17	100	0	68	41	11	17	29	1.85
2069228--2069261	2	17.0	2	100	0	68	50	0	0	50	1.00
2071121--2071152	6	5.3	6	92	0	55	34	3	15	46	1.62
2071349--2071411	2	31.5	2	86	0	90	42	0	4	52	1.22
2082380--2082410	2	15.5	2	100	0	62	0	48	0	51	1.00
2082410--2082437	2	14.0	2	100	0	56	50	0	0	50	1.00
2083301--2083333	2	16.5	2	93	0	57	45	0	3	51	1.16
2088734--2088798	16	4.0	15	78	13	58	47	1	3	47	1.27
2095222--2095249	3	9.3	3	100	0	56	0	32	0	67	0.91
2095741--2095783	22	2.0	21	86	13	61	25	11	9	53	1.67
2096669--2096737	34	2.1	34	91	2	113	42	13	21	23	1.88
2097352--2097387	14	2.7	13	87	8	54	88	0	11	0	0.50
2098227--2098275	22	2.2	22	82	7	55	36	16	6	40	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2123627--2123943	110	2.9	106	78	6	312	31	16	19	32	1.94
2133617--2133754	70	2.0	70	92	0	231	30	24	19	25	1.98
2134176--2134546	28	13.6	28	70	13	111	33	28	17	21	1.96
2134248--2134412	26	6.2	26	71	15	113	33	29	15	21	1.94
2134176--2134417	108	2.2	108	82	2	272	33	29	16	20	1.95
2134487--2134579	28	3.3	28	81	0	96	31	26	20	21	1.98
2135484--2135523	14	2.6	16	77	22	50	72	0	27	0	0.85
2135488--2135517	14	2.2	13	94	5	51	76	0	23	0	0.78
2136318--2136543	114	2.0	114	79	3	249	32	15	17	35	1.91
2136428--2136776	110	3.2	110	77	2	362	32	14	18	34	1.91
2137128--2137171	3	15.3	3	81	9	56	75	0	0	25	0.81
2138836--2138869	14	2.5	14	95	4	61	26	5	8	58	1.51
2139584--2139658	20	3.7	20	76	13	71	37	12	9	41	1.74
2144200--2144263	13	5.4	13	75	21	68	34	15	15	34	1.90
2144180--2144279	33	3.0	33	94	5	168	33	18	14	35	1.90
2144213--2144278	20	3.7	20	73	26	83	33	18	15	33	1.92
2144308--2144363	19	2.8	21	78	10	71	32	17	14	35	1.90
2144349--2144375	13	2.1	13	100	0	54	40	14	14	29	1.86
2146284--2146312	2	14.5	2	100	0	58	51	0	0	48	1.00
2149294--2149319	2	13.0	2	100	0	52	0	0	50	50	1.00
2150060--2150084	1	25.0	1	100	0	50	0	0	100	0	0.00
2151481--2151548	7	10.5	6	73	14	55	22	1	36	39	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2151481--2151597	14	8.7	13	72	13	69	26	0	31	41	1.62
2151474--2151544	20	3.6	19	79	12	63	22	1	36	39	1.63
2151556--2151595	7	5.7	7	85	11	55	37	0	17	45	1.49
2151585--2151640	22	2.6	21	77	8	60	25	3	30	41	1.72
2155456--2155546	40	2.2	41	84	1	121	26	21	12	39	1.89
2155891--2156244	14	25.7	14	74	11	108	7	5	48	38	1.56
2155919--2155965	15	3.1	15	87	0	58	27	0	23	48	1.51
2155917--2155972	22	2.5	22	83	11	62	26	0	26	46	1.53
2155969--2157598	7	234.3	7	85	7	1270	5	4	50	39	1.44
2156132--2156221	19	4.4	21	85	9	80	1	7	55	35	1.36
2156186--2156230	12	3.6	12	90	6	63	0	2	53	44	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15

The End!