genome.fa.s47.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold47
Parameters: 2 7 7 80 10 50 1000
Length:  2157611

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  7  of  15  ( 1735 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747151--747176	1	26.0	1	100	0	52	0	0	0	100	0.00
747369--747406	3	12.7	3	83	10	51	34	2	0	63	1.09
747686--747724	3	13.0	3	94	0	60	71	0	0	28	0.86
748814--748889	36	2.1	34	80	7	89	48	0	1	50	1.09
748823--748890	36	1.9	36	87	3	102	47	0	0	52	1.00
749484--749530	20	2.5	19	73	10	51	61	0	0	38	0.96
750485--750535	15	3.4	15	86	5	68	66	0	0	33	0.92
750497--750540	14	3.1	14	80	6	52	63	0	0	36	0.95
754170--754239	13	5.3	13	73	10	61	51	0	0	48	1.00
754180--754253	25	3.1	25	76	14	77	56	0	0	43	0.99
754667--754692	3	8.7	3	100	0	52	34	0	0	65	0.93
756339--756382	2	22.0	2	100	0	88	50	0	0	50	1.00
758529--758626	50	1.9	51	89	6	155	48	0	1	50	1.07
758713--758769	29	1.9	30	85	3	80	49	1	5	43	1.35
759050--759074	4	6.2	4	100	0	50	24	0	0	76	0.80
759258--759327	24	2.9	25	76	14	67	35	1	0	62	1.04
759272--759327	29	1.9	29	86	13	80	37	0	0	62	0.95
765788--765827	13	3.0	13	92	3	62	42	0	2	55	1.13
767179--767250	24	3.2	22	72	18	60	58	0	1	40	1.07
767466--767512	25	1.9	24	82	4	58	51	0	0	48	1.00
768625--768663	20	1.9	21	89	5	62	35	17	23	23	1.95
768719--768756	20	1.9	20	84	10	51	47	0	2	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
768742--768876	32	4.4	32	73	15	122	42	0	0	56	1.04
768796--768842	12	3.8	12	80	8	51	29	0	0	70	0.88
768773--768836	7	8.7	7	74	19	51	34	0	0	65	0.93
768772--768842	16	4.5	16	73	18	51	35	0	0	64	0.94
768821--768867	15	3.1	16	77	20	55	40	0	0	59	0.97
769096--769145	20	2.5	20	83	3	66	36	8	0	56	1.29
769299--769360	29	2.1	29	85	5	81	48	0	0	51	1.00
769428--769703	141	2.0	138	87	4	405	46	6	12	34	1.68
772339--772466	61	2.1	61	85	2	168	42	12	8	35	1.73
772586--772712	61	2.1	61	84	0	164	41	7	11	39	1.70
772695--772843	61	2.4	61	78	4	158	47	8	4	39	1.54
773596--773637	21	2.0	21	86	13	61	42	0	0	57	0.99
774320--774386	19	3.5	19	77	6	64	58	2	0	38	1.14
776308--776338	16	1.9	16	93	0	53	9	0	90	0	0.46
776712--776758	16	2.9	16	78	15	51	23	0	4	72	1.02
778688--778827	74	1.9	74	86	1	201	42	8	6	42	1.61
779237--779284	18	2.6	18	90	3	69	47	2	6	43	1.40
779821--779867	2	23.5	2	100	0	94	51	0	0	48	1.00
779867--779905	2	19.5	2	100	0	78	51	0	48	0	1.00
780782--780818	17	2.2	17	90	0	56	45	0	0	54	1.00
780782--780841	17	3.6	16	78	13	50	41	0	0	58	0.98
780788--780841	16	3.3	17	82	7	67	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
781091--781250	79	2.0	79	95	0	284	30	10	3	55	1.49
781480--781511	10	3.3	10	91	8	57	40	9	9	40	1.70
781482--781511	9	3.2	9	95	4	51	40	10	10	40	1.72
785208--785246	11	3.5	11	79	6	51	25	0	0	74	0.82
785639--785727	19	4.6	20	75	16	73	57	0	0	42	0.98
785634--785725	27	3.4	27	72	17	68	56	0	0	43	0.99
788458--788524	33	2.0	33	100	0	134	26	14	11	46	1.80
788872--788930	29	2.0	29	100	0	118	33	13	10	42	1.78
789951--789982	16	1.9	17	93	6	57	65	0	6	28	1.16
791125--791158	3	11.3	3	100	0	68	32	0	0	67	0.91
933029--933062	3	11.3	3	100	0	68	32	0	32	35	1.58
933767--933945	14	12.6	14	64	18	59	58	1	1	39	1.16
933770--933947	8	21.0	8	69	21	71	57	1	1	39	1.16
934417--934450	2	17.0	2	93	0	59	50	2	0	47	1.16
934662--934750	16	5.7	16	76	10	85	53	0	0	46	1.00
934650--934748	31	3.2	30	70	17	87	52	0	0	47	1.00
934852--934889	16	2.4	17	86	13	62	57	5	0	36	1.21
934917--934991	7	10.3	7	82	16	82	58	0	0	41	0.98
936896--936954	14	3.4	18	73	20	54	47	1	0	50	1.11
936897--936963	32	2.1	33	88	2	100	46	2	0	50	1.16
936997--937025	11	2.7	11	94	5	51	34	0	0	65	0.93
938954--939004	2	25.5	2	100	0	102	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
939673--939711	15	2.7	15	84	15	55	41	0	10	48	1.37
942320--942351	3	10.7	3	100	0	64	34	0	0	65	0.93
944177--944213	2	18.5	2	100	0	74	48	0	0	51	1.00
945251--945301	21	2.3	22	74	22	52	54	0	0	45	0.99
945329--945359	2	15.5	2	100	0	62	48	0	0	51	1.00
950419--950488	34	2.1	34	97	2	133	37	5	5	51	1.50
950784--950817	2	17.0	2	100	0	68	50	0	0	50	1.00
951759--951800	21	1.9	22	85	9	59	52	4	0	42	1.22
952293--952412	8	14.9	8	67	22	56	60	0	0	37	1.08
952293--952406	17	6.4	17	75	13	70	60	0	0	37	1.09
952310--952361	19	2.8	18	85	5	68	63	1	0	34	1.06
952308--952425	28	4.3	27	76	13	89	62	1	0	35	1.05
952352--952418	34	2.0	33	85	8	91	62	0	0	37	0.95
952314--952419	11	9.6	11	69	13	58	62	0	0	36	1.02
952366--952445	34	2.4	34	82	14	87	61	1	0	37	1.04
952813--952837	11	2.3	11	100	0	50	92	0	8	0	0.40
953381--953434	24	2.2	26	77	12	60	42	9	5	42	1.60
953895--954006	55	2.0	55	92	0	188	49	6	5	39	1.51
954670--954701	15	2.1	16	94	5	57	53	0	0	46	1.00
954877--954935	23	2.6	23	82	12	68	57	0	0	42	0.98
954939--954974	19	1.9	18	88	5	54	66	0	2	30	1.06
954781--955254	231	2.0	235	88	5	703	53	4	2	39	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
961975--962031	24	2.5	21	75	13	51	36	1	3	57	1.26
962181--962253	29	2.6	28	81	10	80	61	0	0	38	0.96
962198--962251	24	2.4	23	78	9	58	64	0	0	35	0.94
962181--962238	16	3.9	15	75	13	57	60	0	0	39	0.97
962807--962855	21	2.3	22	79	10	66	36	0	0	63	0.95
967085--967130	18	2.5	18	85	3	65	47	23	8	19	1.77
967930--967967	12	3.0	13	85	14	53	2	15	0	81	0.80
967975--968034	28	2.1	28	90	6	95	55	1	25	18	1.52
973219--973669	155	2.9	156	82	6	542	33	27	10	29	1.90
974915--974955	21	1.9	22	85	5	57	31	0	4	63	1.15
974978--975032	17	3.5	16	78	9	51	32	0	3	63	1.12
975119--975167	24	2.0	24	88	0	71	44	0	8	46	1.33
976146--976183	17	2.2	17	86	13	51	36	0	2	60	1.11
976547--976579	17	2.0	17	94	5	59	54	0	0	45	0.99
976577--976618	22	1.9	22	85	9	59	50	7	0	42	1.30
977049--977074	2	13.0	2	100	0	52	50	0	0	50	1.00
977398--977448	24	2.2	23	86	6	68	43	19	9	27	1.82
980011--980084	35	2.1	35	92	0	121	18	5	13	62	1.50
986920--986967	11	4.3	11	75	2	51	56	4	0	39	1.19
986920--986967	22	2.1	23	88	3	71	56	4	0	39	1.19
989452--989495	21	2.1	22	88	12	67	27	0	2	70	0.99
989695--989734	18	2.2	18	95	0	71	35	12	15	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
990892--990920	7	4.1	7	100	0	58	41	0	0	58	0.98
993669--993695	2	13.5	2	100	0	54	48	0	0	51	1.00
994276--994377	11	9.2	11	72	14	84	61	0	0	37	1.03
994276--994361	16	5.1	16	76	9	73	63	0	1	34	1.02
994276--994386	45	2.5	45	82	7	120	60	0	0	38	1.03
994274--994377	33	3.1	35	79	9	101	61	0	0	37	1.03
994332--994407	17	4.6	17	74	15	63	53	0	0	46	1.00
994536--994575	2	20.0	2	100	0	80	0	50	0	50	1.00
994994--995032	2	19.5	2	89	0	60	46	53	0	0	1.00
995693--995766	12	6.5	12	72	18	52	45	0	1	52	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15