genome.fa.s484.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold484
Parameters: 2 7 7 80 10 50 1000
Length:  1030986

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
665926--666006	41	2.1	36	82	15	92	64	1	0	34	1.02
665939--666007	16	4.3	15	79	16	77	60	1	0	37	1.06
666457--666486	11	2.8	11	95	5	53	66	0	6	26	1.16
666719--666753	3	12.0	3	93	6	63	65	0	0	34	0.93
668675--668723	3	16.3	3	95	0	89	32	0	2	65	1.04
669044--669098	29	1.9	29	88	3	85	40	0	0	60	0.97
669049--669087	15	2.4	16	83	12	53	43	0	0	56	0.99
670339--670397	25	2.3	26	85	8	86	61	3	1	33	1.23
670418--670534	15	7.5	15	69	15	58	58	5	2	32	1.35
671396--671444	2	24.5	2	91	0	80	46	2	2	48	1.25
673685--673724	17	2.5	15	81	18	53	50	0	0	50	1.00
673691--673736	23	1.9	25	86	8	69	50	0	0	50	1.00
674335--674407	36	2.0	36	84	5	94	45	0	0	54	0.99
675038--675069	13	2.4	14	89	10	57	40	0	6	53	1.26
676401--676426	12	2.2	12	100	0	52	50	0	0	50	1.00
676747--676799	17	3.1	17	83	0	70	52	0	0	47	1.00
678327--678387	24	2.6	24	77	10	63	42	3	0	54	1.17
678326--678395	25	2.6	26	78	17	72	44	2	0	52	1.15
679432--679460	2	14.5	2	100	0	58	51	0	0	48	1.00
680410--680463	25	2.1	27	86	6	76	48	1	0	50	1.11
680919--680947	2	14.5	2	100	0	58	48	0	0	51	1.00
682910--682938	14	2.0	15	93	6	51	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
688417--688456	2	20.0	2	100	0	80	50	0	0	50	1.00
689746--689882	70	2.0	70	83	2	177	42	7	4	45	1.51
693417--693443	2	13.5	2	100	0	54	0	48	0	51	1.00
693446--693492	6	7.8	6	97	0	76	51	10	0	38	1.37
693896--694026	70	1.9	70	83	3	174	45	3	3	47	1.36
694045--694129	30	3.0	28	81	8	93	57	1	2	38	1.19
694045--694121	29	2.6	31	80	11	92	54	1	2	41	1.22
694100--694140	20	2.0	20	86	9	57	53	2	0	43	1.13
694422--694456	17	1.9	19	88	11	56	57	0	5	37	1.23
699584--699832	123	2.0	124	96	0	464	28	22	14	33	1.94
702332--702357	2	13.0	2	100	0	52	0	50	0	50	1.00
702357--702413	2	28.5	2	96	0	105	47	0	1	50	1.11
702868--702898	10	3.1	10	95	0	53	51	6	0	41	1.27
702864--702894	14	2.2	14	94	0	53	51	9	0	38	1.35
704736--704791	14	3.9	14	80	2	58	42	0	0	57	0.99
704772--704810	19	2.0	19	85	5	51	33	0	0	66	0.92
712381--712412	2	16.0	2	100	0	64	50	0	50	0	1.00
715899--715927	3	9.7	3	100	0	58	68	0	0	31	0.89
716727--716799	31	2.5	28	72	17	67	42	0	0	57	0.98
716828--716885	28	2.1	27	83	3	71	56	0	1	41	1.09
717072--717097	3	8.7	3	100	0	52	30	0	0	69	0.89
717285--717424	34	4.2	33	70	19	85	42	0	2	54	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
717356--717424	36	1.9	36	88	2	104	42	0	0	57	0.98
717385--717473	45	1.9	45	81	6	106	38	3	0	58	1.15
722981--723018	18	2.1	18	90	5	58	44	2	0	52	1.14
726716--726740	3	8.3	3	100	0	50	32	0	0	68	0.90
728210--728275	3	23.0	3	87	9	102	68	0	1	30	0.99
728274--728303	3	10.0	3	100	0	60	33	0	0	66	0.92
728819--728856	15	2.4	16	86	4	60	47	2	0	50	1.15
729118--729154	17	2.1	18	90	5	58	45	2	0	51	1.15
729129--729184	19	3.0	20	79	10	64	48	0	1	50	1.11
729122--729183	19	3.2	19	81	6	63	48	1	1	48	1.21
729370--729402	13	2.6	13	85	4	50	57	0	0	42	0.98
729381--729486	18	5.4	20	75	19	82	54	0	0	45	0.99
729410--729487	6	11.6	7	68	26	53	53	0	0	46	1.00
729432--729501	29	2.5	27	78	13	79	57	0	0	42	0.99
729411--729495	15	4.7	20	67	25	62	55	0	0	44	0.99
729963--729992	15	1.9	16	93	6	53	46	13	13	26	1.80
732657--732701	19	2.3	20	78	21	51	40	0	4	55	1.20
732688--732725	15	2.5	16	83	12	53	55	2	0	42	1.14
733016--733083	19	3.6	20	75	11	63	41	0	0	58	0.98
733615--733670	19	2.9	19	81	10	60	67	1	30	0	1.01
734282--734332	23	2.3	23	86	10	70	29	1	3	64	1.22
734426--734540	58	2.0	59	80	1	133	37	9	5	47	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
734676--734769	24	3.6	24	70	20	73	32	2	2	62	1.19
737436--737474	2	19.5	2	100	0	78	51	0	0	48	1.00
737863--737902	20	2.0	21	90	5	64	52	0	0	47	1.00
737868--737935	29	2.3	30	85	12	88	45	0	0	54	0.99
737881--737927	14	3.4	14	80	8	51	46	0	0	53	1.00
739161--739205	4	11.2	4	100	0	90	51	0	24	24	1.49
739203--739227	2	12.5	2	100	0	50	52	0	48	0	1.00
739321--739364	15	2.9	15	80	9	54	54	2	0	43	1.12
739518--739552	15	2.3	15	90	0	52	77	2	0	20	0.90
740628--740671	16	2.8	16	75	0	52	45	18	15	20	1.85
740660--740700	16	2.6	16	92	0	73	39	34	17	9	1.82
741759--741835	32	2.5	31	77	10	84	44	23	14	18	1.86
743344--743396	23	2.3	23	80	6	63	52	1	1	43	1.23
743437--743485	17	2.8	18	76	14	57	53	0	0	46	1.00
743910--743940	16	1.9	16	93	0	53	35	0	3	61	1.12
747967--748029	16	4.1	14	78	13	63	33	3	4	58	1.35
747968--748050	31	2.6	31	82	1	94	31	3	6	59	1.39
748169--748213	16	2.8	16	96	0	81	42	0	2	55	1.12
749333--749383	15	3.5	15	84	12	70	11	27	0	60	1.31
751565--751603	16	2.6	14	81	14	51	64	0	2	33	1.08
751563--751597	15	2.3	15	90	5	52	65	0	2	31	1.07
751730--751774	13	3.5	12	82	11	54	48	2	0	48	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
752382--752419	2	19.5	2	91	5	60	44	0	2	52	1.14
752925--752954	16	1.9	16	93	6	53	80	0	20	0	0.72
753015--753044	16	1.9	15	93	6	51	80	0	16	3	0.85
755856--755903	16	2.9	16	78	6	51	43	6	0	50	1.27
755842--755907	7	9.6	7	72	21	50	43	4	1	50	1.32
756459--756500	22	1.9	22	95	0	75	40	0	11	47	1.40
756979--757012	18	1.9	18	88	5	52	41	5	0	52	1.25
760174--760237	24	2.5	26	82	12	80	29	4	15	50	1.65
760204--760259	24	2.3	23	84	12	67	33	7	16	42	1.75
764825--764862	13	2.9	14	80	11	53	52	0	0	47	1.00
766156--766212	21	2.6	22	78	10	64	47	0	1	50	1.11
766360--766404	8	5.8	8	80	15	58	40	0	0	60	0.97
766357--766405	24	2.0	25	88	11	75	42	0	0	57	0.99
766345--766402	30	1.9	30	89	3	89	39	0	0	60	0.97
766534--766605	30	2.4	30	97	0	135	41	23	19	15	1.89
769535--769586	19	2.9	18	73	18	54	51	7	0	40	1.30
770506--770570	32	2.0	32	85	5	87	46	1	1	50	1.20
770545--770598	19	2.9	19	76	15	60	51	0	0	48	1.00
771527--771611	39	2.2	39	95	0	152	28	14	11	45	1.79
772232--772270	17	2.1	17	86	13	51	30	2	0	66	1.05
772229--772281	18	3.1	17	76	12	56	35	1	0	62	1.06
778069--778097	11	2.5	12	94	5	51	79	3	0	17	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
780990--781019	14	2.1	14	93	0	51	40	3	0	56	1.16
781227--781261	16	2.2	16	89	0	52	48	8	2	40	1.49
781533--781567	2	17.5	2	100	0	70	51	0	0	48	1.00
781906--781953	23	2.0	25	92	8	82	54	0	0	45	0.99
781906--781968	23	2.7	24	84	15	80	52	1	0	46	1.10
781974--782016	18	2.4	18	76	0	50	39	0	0	60	0.97
782162--782206	23	2.0	23	91	4	74	53	0	2	44	1.13
782206--782233	7	4.0	7	100	0	56	28	0	0	71	0.86
783850--783883	15	2.2	15	89	5	50	64	0	0	35	0.94
783905--783948	20	2.2	20	96	4	81	56	0	4	38	1.20

Tables:   1   2   3   4   5   6