genome.fa.s484.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold484
Parameters: 2 7 7 80 10 50 1000
Length:  1030986

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 680 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
923446--923486	16	2.5	17	88	11	68	53	0	0	46	1.00
923446--923537	15	6.4	15	70	23	65	56	0	1	42	1.06
923464--923537	26	2.7	27	78	15	82	56	0	1	41	1.07
923614--923656	19	2.3	19	80	8	52	60	4	9	25	1.47
923884--923931	13	3.5	15	78	16	59	4	18	0	77	0.93
924243--924279	19	2.0	19	89	5	58	67	2	5	24	1.25
924395--924440	22	2.1	22	88	8	67	63	4	0	32	1.14
924401--924444	11	3.7	13	77	22	51	59	6	0	34	1.24
926372--926439	21	3.2	20	86	10	91	39	8	30	20	1.83
929254--929300	20	2.4	20	85	3	60	51	0	0	48	1.00
929254--929311	19	3.0	20	85	5	66	50	0	0	50	1.00
934779--934934	15	10.4	15	70	6	84	16	18	28	37	1.92
934831--934930	30	3.3	30	88	0	146	14	19	30	37	1.90
934944--935109	15	11.3	15	73	20	145	16	23	19	39	1.92
934944--935113	30	5.8	30	93	4	274	17	23	20	38	1.93
934945--935113	57	2.9	60	92	2	272	17	23	20	38	1.93
939797--939837	14	3.0	14	86	13	59	41	0	0	58	0.98
939781--939832	11	4.6	11	78	17	54	38	0	0	61	0.96
940821--940847	2	13.5	2	100	0	54	51	0	0	48	1.00
941474--941508	16	2.2	16	94	0	61	22	51	25	0	1.48
942392--942489	30	3.3	30	79	4	90	19	18	24	37	1.94
942424--942493	15	4.7	15	76	3	70	20	15	24	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
942484--942555	30	2.4	30	83	0	90	18	20	20	40	1.92
946278--946335	20	2.9	20	81	0	71	58	12	15	13	1.63
947151--947203	25	2.1	25	82	0	61	66	7	0	26	1.18
952304--952449	75	1.9	75	81	0	175	39	9	4	46	1.56
955761--955793	3	11.0	3	93	0	57	63	0	0	36	0.95
957719--957821	50	2.1	50	90	0	161	42	22	13	21	1.87
959909--960088	92	1.9	93	90	1	290	45	17	10	26	1.81
961306--961347	20	2.1	20	90	0	66	45	0	0	54	0.99
961306--961357	21	2.5	21	87	3	70	44	0	0	55	0.99
961305--961367	23	2.8	22	76	13	58	41	0	0	58	0.98
966666--966717	22	2.3	23	75	15	56	38	0	0	61	0.96
969782--969813	2	16.5	2	93	6	57	50	0	0	50	1.00
970546--970575	15	2.0	15	93	0	51	43	0	10	46	1.37
970642--970703	22	2.7	24	78	14	76	51	0	0	48	1.00
976567--976606	21	1.9	21	90	10	64	42	0	0	57	0.98
978976--979029	21	2.5	22	78	9	65	42	1	0	55	1.10
978984--979040	21	2.8	20	76	12	62	40	3	0	56	1.17
979074--979111	16	2.3	17	90	4	60	28	0	0	71	0.87
979076--979114	15	2.4	16	87	8	53	30	0	0	69	0.89
979724--979771	17	2.8	17	78	9	53	33	0	0	66	0.92
979706--979774	25	2.7	24	76	17	59	37	0	0	62	0.96
979978--980036	14	4.1	15	75	12	54	54	0	1	44	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
979982--980055	31	2.4	32	79	18	86	50	0	1	48	1.09
980513--980567	25	2.2	25	87	6	76	67	0	1	30	1.01
980522--980612	32	3.0	32	80	13	97	58	0	1	40	1.05
980547--980612	32	2.0	33	88	2	98	53	0	1	45	1.09
982018--982069	27	2.0	26	84	3	68	59	0	1	38	1.08
987194--987228	18	1.9	18	94	0	61	48	0	0	51	1.00
987221--987267	23	2.0	23	88	8	69	55	0	0	44	0.99
987811--987853	21	2.0	22	86	4	61	53	0	0	46	1.00
997804--997873	28	2.5	29	76	15	69	34	1	0	64	1.03
998460--998493	16	2.2	16	89	5	52	73	0	2	23	0.97
999007--999054	19	2.6	19	77	9	55	37	0	0	62	0.95
999303--999374	29	2.5	30	72	6	85	54	0	6	38	1.28
1000946--1000974	2	15.0	2	92	7	51	48	0	0	51	1.00
1005227--1005268	20	2.0	21	82	13	52	76	4	16	2	1.07
1005894--1005943	25	2.0	25	100	0	100	44	8	4	44	1.52
1006259--1006295	14	2.6	15	83	12	51	72	5	0	21	1.04
1007036--1007062	13	2.1	13	100	0	54	33	0	0	66	0.92
1007344--1007388	18	2.6	18	83	16	60	42	0	0	57	0.98
1007335--1007399	28	2.3	28	81	7	69	44	0	0	55	0.99
1007344--1007395	16	3.0	18	77	11	63	44	0	0	55	0.99
1007415--1007466	15	3.5	15	72	15	54	51	0	0	48	1.00
1008752--1008789	3	12.7	3	100	0	76	0	34	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1010177--1010223	18	2.6	19	80	16	55	40	0	0	59	0.97
1010188--1010247	28	2.2	28	82	8	70	35	1	1	61	1.16
1010233--1010278	23	2.0	23	87	8	67	52	2	2	43	1.25
1010382--1010427	20	2.5	17	83	16	56	52	0	0	47	1.00
1010451--1010507	25	2.5	24	83	13	68	57	5	0	36	1.21
1012205--1012270	31	2.3	30	73	19	68	56	1	1	40	1.18
1012931--1012965	16	2.3	15	90	5	52	40	0	0	60	0.97
1012976--1013036	16	4.1	16	73	16	58	34	0	3	62	1.12
1015706--1015732	2	13.5	2	100	0	54	48	0	0	51	1.00
1017613--1017643	2	15.5	2	93	0	53	51	3	0	45	1.17
1020606--1020636	13	2.4	13	100	0	62	61	6	16	16	1.54
1023033--1023070	17	2.2	18	85	4	51	39	26	13	21	1.89
1024276--1024313	3	12.7	3	100	0	76	0	31	0	68	0.90
1029874--1029909	2	18.5	2	94	5	65	50	0	0	50	1.00

Tables:   1   2   3   4   5   6

The End!