genome.fa.s487.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold487
Parameters: 2 7 7 80 10 50 1000
Length:  574485

Tables:   1   2   3   4   

This is table  3  of  4  ( 471 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
276529--276583	19	2.8	20	69	5	58	36	16	16	30	1.91
276569--276595	13	2.1	13	100	0	54	40	14	14	29	1.86
279106--279131	13	2.0	13	100	0	52	38	15	15	30	1.88
283335--283393	21	2.8	21	97	0	109	33	13	10	42	1.78
285342--285372	13	2.4	13	94	0	53	38	9	16	35	1.81
285987--286025	21	1.9	21	89	5	62	25	12	20	41	1.88
290674--290891	34	6.5	34	85	5	282	40	27	7	24	1.82
290672--290891	67	3.3	67	88	1	323	40	27	7	24	1.82
294957--295019	19	3.3	19	90	0	90	34	19	17	28	1.94
295324--295539	34	6.4	34	85	5	278	40	27	7	24	1.83
295322--295539	67	3.2	67	88	1	319	40	27	7	24	1.82
296627--296665	17	2.5	15	84	12	51	84	2	2	10	0.81
296627--296669	15	2.8	16	83	13	54	81	2	2	13	0.89
297627--297760	32	4.1	33	74	16	116	41	14	10	32	1.80
298680--298719	18	2.2	19	86	4	55	42	2	2	52	1.28
298831--298885	5	10.6	5	79	13	58	78	0	21	0	0.76
298831--298886	21	2.7	20	83	5	76	78	0	21	0	0.75
299693--299732	19	2.1	19	86	9	55	60	0	0	40	0.97
300606--300658	19	2.7	19	82	2	61	37	1	18	41	1.62
300722--300761	20	2.0	21	90	5	64	37	0	0	62	0.95
300898--300949	18	2.8	19	80	11	54	50	1	9	38	1.46
303258--303286	11	2.5	12	94	5	51	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304903--304932	13	2.3	13	94	0	51	56	0	0	43	0.99
305012--305044	9	3.8	9	88	4	50	42	0	0	57	0.98
306451--306498	15	3.0	16	79	17	55	50	0	0	50	1.00
307196--307250	22	2.5	22	75	0	65	38	5	7	49	1.54
308454--308522	22	3.2	21	70	13	52	34	1	0	63	1.03
308487--308546	24	2.4	26	78	13	72	36	0	0	63	0.95
309451--309525	20	3.8	20	78	0	87	34	13	12	40	1.81
309451--309528	40	2.0	39	87	2	111	34	12	12	39	1.82
313082--313106	13	1.9	13	100	0	50	36	16	16	32	1.90
313171--313195	13	1.9	13	100	0	50	32	16	16	36	1.90
313149--313215	33	2.0	33	88	0	98	40	13	11	34	1.81
313997--314123	67	1.9	68	86	1	184	38	11	25	24	1.89
314078--316121	49	41.8	49	85	4	2637	31	17	25	25	1.97
314128--316121	146	13.6	147	90	2	2654	31	17	25	25	1.97
314128--316121	683	2.9	683	94	2	3431	31	17	25	25	1.97
316121--316190	33	2.1	35	94	5	126	20	17	37	25	1.94
316195--317169	34	29.6	33	81	12	793	32	13	33	20	1.91
316304--316357	27	2.0	27	92	0	90	22	14	40	22	1.90
316264--316386	61	2.0	61	85	6	169	33	13	33	20	1.91
316325--317177	233	3.7	229	82	11	868	31	13	34	20	1.91
316699--316750	27	1.9	27	96	0	95	17	17	40	25	1.90
316196--317180	131	7.5	128	80	13	841	32	12	33	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316722--317180	62	6.9	68	85	8	437	32	13	33	20	1.92
318117--318149	1	33.0	1	93	0	57	0	3	0	96	0.20
322145--322187	21	2.0	21	100	0	86	27	20	23	27	1.99
325486--325510	13	1.9	13	100	0	50	36	16	16	32	1.90
325575--325599	13	1.9	13	100	0	50	32	16	16	36	1.90
325553--325619	33	2.0	33	88	0	98	40	13	11	34	1.81
332190--332236	21	2.2	21	85	11	60	78	6	8	6	1.08
333514--334944	28	50.0	29	88	3	1892	28	31	17	22	1.97
333519--334929	370	3.8	370	95	1	2425	28	31	17	22	1.97
335471--335545	20	3.8	20	78	0	87	34	13	12	40	1.81
335471--335548	40	2.0	39	87	2	111	34	12	12	39	1.82
338927--338984	19	3.0	20	80	7	75	34	15	15	34	1.89
338968--338992	13	1.9	13	100	0	50	32	16	16	36	1.90
339610--339664	28	2.0	28	92	0	92	40	23	5	30	1.77
341368--341407	22	1.9	22	90	10	66	42	0	25	32	1.55
341368--341417	22	2.4	22	83	9	61	44	0	24	32	1.54
343335--343401	33	2.0	33	88	0	98	34	11	13	40	1.81
343355--343379	13	1.9	13	100	0	50	36	16	16	32	1.90
343443--343467	13	1.9	13	100	0	50	32	16	16	36	1.90
343476--343593	52	2.3	52	95	0	209	35	17	16	29	1.93
351750--351781	17	1.9	16	93	6	55	31	6	3	59	1.38
351746--351840	19	5.5	17	68	26	58	36	5	1	56	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
356695--356746	19	2.6	21	90	6	81	38	13	15	32	1.86
356799--356824	13	2.0	13	100	0	52	30	15	15	38	1.88
359179--359410	50	4.6	51	83	5	292	29	25	10	34	1.90
359180--359410	101	2.3	101	90	1	374	29	25	10	34	1.90
359428--359574	79	1.9	79	81	5	181	26	29	12	31	1.92
361296--361357	32	1.9	33	90	3	99	41	12	14	30	1.83
367518--367555	13	2.9	13	96	0	67	34	18	15	31	1.92
367667--367712	21	2.2	20	81	11	58	32	19	4	43	1.71
370122--370147	13	2.0	13	100	0	52	38	15	15	30	1.88
378939--378994	20	2.8	19	89	5	76	37	16	17	28	1.91
379064--379089	13	2.0	13	100	0	52	38	15	15	30	1.88
379046--379109	32	2.0	33	90	3	103	42	15	14	28	1.86
386709--386751	23	2.0	21	81	9	50	13	9	16	60	1.58
387531--387586	20	2.8	19	89	5	76	37	16	17	28	1.91
387656--387681	13	2.0	13	100	0	52	38	15	15	30	1.88
387638--387701	32	2.0	33	90	3	103	42	15	14	28	1.86
395195--395250	20	2.8	19	89	5	76	37	16	17	28	1.91
395320--395345	13	2.0	13	100	0	52	38	15	15	30	1.88
395302--395364	32	2.0	32	90	6	101	41	15	14	28	1.87
396464--396680	20	10.7	20	66	20	121	42	11	16	29	1.83
396464--396691	91	2.5	91	90	0	348	42	11	17	28	1.84
397387--397505	49	2.6	45	81	5	130	31	21	27	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
397536--397941	28	14.2	28	86	3	542	21	16	32	30	1.95
397562--397941	141	2.7	140	90	2	582	21	15	32	30	1.94
412397--412435	9	4.5	8	87	12	51	0	20	0	79	0.73
416165--417452	156	8.3	156	79	6	1190	38	20	18	22	1.93
416220--417452	312	4.0	311	83	2	1469	38	21	18	22	1.93
417959--418279	128	2.5	127	81	10	384	42	12	9	34	1.75
419901--419936	19	1.9	19	88	5	56	50	2	13	33	1.57
419875--420363	168	3.0	163	83	7	585	50	8	13	27	1.70
422866--422936	4	18.2	4	83	11	51	69	0	1	29	0.98
422990--423193	14	14.0	14	72	15	119	24	21	10	44	1.83
423006--423165	29	5.4	28	74	18	146	25	21	10	43	1.84
422992--423196	43	4.7	43	74	14	152	23	20	10	44	1.83
423723--423882	63	2.6	61	80	9	191	65	15	17	1	1.36
423721--423896	32	5.7	32	72	19	122	65	15	17	1	1.35
424995--425113	50	2.4	51	89	1	186	27	14	13	44	1.82
428287--428516	42	5.5	42	77	8	184	15	28	17	38	1.91
428507--428650	42	3.4	42	71	2	119	16	22	16	44	1.86
428630--428737	42	2.5	43	79	7	123	12	22	20	44	1.85
428767--428926	43	3.7	43	77	8	130	18	26	17	38	1.92
429708--429757	23	2.2	23	96	0	91	38	6	0	56	1.24
430224--430268	22	2.0	24	86	8	67	40	8	0	51	1.33
431090--431134	2	22.5	2	82	8	56	46	4	2	46	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431090--431134	14	3.2	14	90	6	65	46	4	2	46	1.35
437863--437898	17	2.1	17	89	0	54	44	8	8	38	1.65
440106--440414	150	2.1	150	83	2	381	34	19	20	25	1.96
440424--440743	155	2.1	155	80	4	351	35	19	17	27	1.94
442371--442510	35	3.7	36	75	19	149	41	12	25	20	1.87
442183--442474	126	2.3	125	87	4	410	41	14	22	21	1.89
442328--442898	81	6.7	81	78	12	454	43	14	22	19	1.87
442204--442598	207	1.9	205	89	3	614	41	14	22	21	1.89
442487--443090	46	13.4	45	79	7	541	43	14	22	19	1.87
442626--443047	219	1.9	219	83	7	545	42	13	22	20	1.87

Tables:   1   2   3   4