genome.fa.s487.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold487
Parameters: 2 7 7 80 10 50 1000
Length:  574485

Tables:   1   2   3   4   

This is table  4  of  4  ( 471 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442708--442957	127	2.0	128	86	0	358	43	12	23	20	1.86
442487--443128	265	2.4	265	82	6	697	43	14	22	19	1.87
447709--447755	20	2.4	19	83	13	60	4	17	0	78	0.90
447716--447755	20	2.0	21	90	5	64	5	17	0	77	0.94
449331--449895	88	6.2	91	78	4	488	31	14	25	29	1.95
450701--450869	51	3.3	51	80	1	187	31	13	26	29	1.93
453174--453199	13	2.0	13	100	0	52	38	15	15	30	1.88
453232--453259	13	2.2	13	100	0	56	42	14	14	28	1.84
454359--454399	21	2.0	21	90	4	66	24	2	4	68	1.22
454363--454409	20	2.3	21	77	3	51	29	4	4	61	1.34
455510--455547	19	2.1	17	90	9	58	7	5	2	84	0.86
455509--455555	24	1.9	25	86	4	69	8	8	2	80	0.97
455509--455556	25	1.9	25	83	8	62	8	8	2	81	0.96
456000--456049	26	1.9	26	95	0	91	42	10	18	30	1.82
456386--456415	13	2.3	13	94	0	51	36	10	16	36	1.82
456363--456428	33	2.0	33	88	5	98	34	16	13	34	1.88
456460--456530	19	3.7	19	94	1	115	36	16	21	25	1.94
456460--456551	39	2.4	38	85	7	123	38	17	19	25	1.93
460394--460418	13	1.9	13	100	0	50	32	16	16	36	1.90
460427--460555	52	2.5	52	89	5	206	33	19	17	30	1.94
473003--473151	52	2.9	51	89	4	235	30	17	18	32	1.94
473140--473164	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
473203--473260	20	3.0	20	84	2	73	46	13	10	29	1.77
474082--474271	52	3.8	51	79	14	227	30	18	27	23	1.98
474135--474218	43	2.0	43	92	0	141	25	20	28	26	1.99
474083--474270	95	2.0	95	90	4	299	29	19	27	23	1.98
474319--474475	28	5.4	28	87	3	179	21	15	28	34	1.94
474293--474475	56	3.2	57	84	7	219	21	15	28	34	1.94
474319--474753	30	14.6	30	78	8	322	25	15	30	28	1.96
474449--474539	35	2.6	34	79	8	103	38	12	28	20	1.89
474535--474749	29	7.4	30	82	5	235	21	17	32	28	1.96
474334--474748	59	6.9	58	76	10	327	25	16	30	27	1.96
476190--476289	1	100.0	1	73	0	65	4	2	9	85	0.81
476190--476289	16	6.4	16	81	11	102	4	2	9	85	0.81
476190--476289	32	3.2	30	81	12	114	4	2	9	85	0.81
486000--486062	33	1.9	33	90	6	101	34	17	11	36	1.85
486118--486142	13	1.9	13	100	0	50	36	16	16	32	1.90
488482--488531	20	2.5	19	81	18	57	44	2	20	34	1.63
488650--488688	13	3.0	13	84	0	51	41	10	10	38	1.73
496033--496070	20	1.9	20	84	10	51	63	2	10	23	1.39
495617--496121	166	3.1	163	78	11	444	48	8	11	31	1.68
496512--496540	11	2.6	11	100	0	58	58	17	0	24	1.38
496851--496954	46	2.2	46	81	1	118	41	8	27	22	1.83
496928--497230	47	6.4	46	74	5	194	41	16	20	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
496928--497197	94	2.9	95	81	6	273	41	16	20	21	1.90
496948--497225	95	2.9	95	80	2	247	41	17	19	21	1.90
496996--497260	47	5.6	47	75	6	214	42	15	21	20	1.89
497265--497360	45	2.1	45	86	0	129	42	17	18	20	1.89
499597--499624	10	2.8	10	100	0	56	14	10	0	75	1.06
499584--499641	10	6.2	10	80	9	52	8	12	0	79	0.94
504693--504743	23	2.2	23	79	6	59	29	19	7	43	1.79
505184--505266	28	2.9	28	77	12	89	60	7	20	12	1.55
505793--505842	19	2.6	19	90	0	73	30	10	20	40	1.85
505895--505922	13	2.2	13	100	0	56	28	14	17	39	1.89
512920--512993	1	74.0	1	72	0	58	86	13	0	0	0.57
512923--512993	9	7.6	9	83	16	83	85	14	0	0	0.59
512922--512993	18	3.8	18	89	10	101	86	13	0	0	0.58
512920--512993	28	2.6	29	83	10	100	86	13	0	0	0.57
512920--512991	25	2.8	25	84	12	85	86	13	0	0	0.58
514281--514454	61	2.9	61	89	5	255	25	32	17	25	1.97
514276--514460	31	6.1	31	85	8	220	23	31	16	28	1.96
514525--515486	49	19.9	49	79	8	953	24	25	17	32	1.97
514778--514845	21	3.2	21	63	19	50	26	27	17	27	1.98
514525--515367	184	4.4	184	88	4	1051	24	25	18	31	1.97
514986--515428	102	4.4	101	90	1	631	23	25	17	33	1.97
516187--516243	21	2.8	21	89	2	80	33	17	12	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
531028--531612	79	7.4	79	83	5	632	32	13	25	27	1.94
531028--531612	157	3.7	158	85	4	738	32	13	25	27	1.94
533950--533979	13	2.3	13	94	0	51	40	10	16	33	1.82
533961--534016	20	2.8	20	86	0	76	44	12	14	28	1.81
534687--534827	35	3.8	33	73	21	120	36	16	26	20	1.93
534604--534868	77	3.4	76	85	7	286	39	15	25	19	1.91
534721--535000	42	6.8	42	73	16	239	39	15	25	19	1.91
534906--534995	45	2.0	43	83	12	112	45	13	23	17	1.84
534864--535029	84	2.0	83	83	9	212	40	14	24	19	1.89
534991--536879	62	30.6	62	84	2	2185	31	19	25	23	1.98
543059--543447	79	4.9	79	79	3	408	31	12	26	29	1.93
543059--543448	157	2.5	158	82	2	462	31	13	26	29	1.93
543380--543550	51	3.4	51	92	0	279	29	14	27	28	1.95
543301--543629	181	1.8	181	87	2	491	30	14	25	29	1.95
543223--543707	260	1.9	258	84	1	648	30	13	26	29	1.94
543482--543717	79	3.0	78	86	1	321	33	15	23	27	1.95
544390--544431	22	2.0	22	85	4	59	42	4	9	42	1.58
546836--546962	67	1.9	68	85	1	175	38	11	25	25	1.88
546915--547065	52	2.8	55	82	3	191	33	15	24	26	1.95
546623--547468	400	2.1	400	95	0	1521	36	14	25	23	1.93
547376--548833	49	30.9	49	84	8	1868	33	17	24	23	1.96
547376--548833	92	15.4	94	86	6	1721	33	17	24	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
547317--548833	141	10.7	144	87	6	1820	33	17	24	23	1.96
548842--548959	33	3.6	32	88	3	182	21	16	32	29	1.95
549026--549085	27	2.2	27	93	0	102	30	13	36	20	1.90
548955--549109	68	2.4	64	85	9	201	32	12	36	19	1.89
550127--550178	16	3.4	16	86	5	72	0	5	7	86	0.70
557294--557422	52	2.5	52	98	0	249	28	17	17	35	1.93
557431--557455	13	1.9	13	100	0	50	36	16	16	32	1.90
557498--557595	19	5.8	18	71	28	90	36	17	11	34	1.85
557517--557573	13	3.9	13	74	24	51	33	17	12	36	1.87
557496--557593	32	3.0	32	95	1	169	35	17	11	35	1.85
559271--559325	20	2.8	20	91	0	92	47	9	12	30	1.73
559987--560946	42	23.3	40	73	15	507	39	13	27	20	1.90
560204--560513	41	7.7	36	78	13	172	39	12	28	20	1.89
560289--560595	160	1.9	164	85	5	428	39	12	27	20	1.88
560565--560767	88	2.4	84	84	8	250	39	13	28	18	1.89
560916--561333	62	6.7	62	87	3	556	32	19	25	23	1.98
560935--561348	186	2.2	185	91	2	650	30	19	25	24	1.98
564010--564084	14	5.7	13	74	13	55	42	12	14	30	1.82
564102--564709	28	21.6	28	82	6	685	28	29	17	24	1.97
564102--564709	114	5.4	114	84	5	731	28	29	17	24	1.97
571147--571218	36	2.0	36	91	5	119	29	6	5	58	1.47
572014--572057	21	2.0	21	86	4	61	79	0	20	0	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
572014--572050	10	3.5	10	92	7	56	78	0	21	0	0.75

Tables:   1   2   3   4

The End!