genome.fa.s494.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold494
Parameters: 2 7 7 80 10 50 1000
Length:  556777

Tables:   1   2   3   4   

This is table  3  of  4  ( 453 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310751--310824	28	2.6	28	87	10	107	25	18	31	24	1.98
310909--310980	28	2.7	26	82	8	92	27	22	30	19	1.98
310540--311192	266	2.5	266	91	1	1006	33	14	24	27	1.94
311017--311090	28	2.6	28	75	10	71	25	17	29	27	1.97
311068--311220	51	3.0	51	75	3	155	34	11	23	30	1.90
311077--311243	51	3.3	50	76	8	149	32	13	24	29	1.93
313539--313592	20	2.7	20	94	5	92	44	12	16	25	1.84
315366--315398	8	4.2	8	88	3	50	87	0	12	0	0.53
315742--315776	18	1.9	18	88	11	54	80	0	11	8	0.92
316673--316697	10	2.5	10	100	0	50	92	0	8	0	0.40
316856--317021	87	1.9	88	82	3	210	26	16	12	43	1.84
317754--318202	47	9.5	47	76	5	345	21	21	17	39	1.92
317754--318036	93	3.0	94	88	3	399	22	21	17	37	1.94
318118--318231	47	2.4	46	81	8	124	20	27	13	39	1.89
318239--318395	44	3.6	44	74	6	156	21	21	17	39	1.92
318165--318397	44	5.2	42	71	12	153	21	23	15	39	1.92
318476--318676	44	4.6	43	74	11	185	21	23	16	37	1.93
318794--319794	42	23.7	42	78	4	733	16	25	17	40	1.90
320324--320372	16	3.2	16	72	19	50	81	0	0	18	0.69
320327--320402	22	3.5	22	79	13	77	76	1	0	22	0.86
320327--320415	10	8.5	11	73	21	75	74	1	0	24	0.89
320335--320419	27	3.0	27	76	18	93	71	1	0	27	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320327--320439	33	3.4	31	79	14	93	71	0	0	26	0.97
320858--320911	27	2.0	27	92	0	90	42	16	27	12	1.85
322511--322535	13	1.9	13	100	0	50	36	16	16	32	1.90
322491--322557	33	2.0	33	88	0	98	32	11	14	40	1.83
322577--322601	13	1.9	13	100	0	50	32	16	16	36	1.90
326722--328175	314	4.7	313	75	10	1131	37	20	17	23	1.94
327024--328178	628	1.8	632	81	5	1428	38	20	17	24	1.93
326722--328178	471	3.1	464	75	7	1265	37	20	17	23	1.94
326722--328184	157	9.4	154	75	8	958	37	20	17	23	1.94
328313--328720	170	2.4	167	88	4	606	43	10	11	34	1.75
345526--345578	19	2.7	20	91	2	90	33	11	15	39	1.83
345621--345659	13	3.0	13	92	0	69	30	17	15	35	1.91
349814--349838	13	1.9	13	100	0	50	32	16	16	36	1.90
352390--352428	13	3.0	13	96	0	69	35	15	17	30	1.91
355097--355178	28	2.9	28	80	7	96	24	17	34	24	1.96
355161--355497	51	6.4	50	70	15	193	31	11	26	30	1.91
355158--355330	52	3.4	51	80	5	195	31	12	26	30	1.92
355316--355388	27	2.6	29	87	6	98	21	19	32	26	1.97
357849--357907	13	5.0	13	70	29	60	42	15	15	27	1.86
357828--357913	33	2.6	33	92	0	127	44	16	15	24	1.86
357935--358002	19	3.9	18	76	23	83	38	14	11	35	1.83
357957--357981	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357938--358000	32	2.0	32	96	0	117	36	15	12	34	1.86
361120--361150	12	2.6	12	94	0	53	19	35	0	45	1.51
362768--362793	13	2.0	13	100	0	52	30	15	15	38	1.88
373683--373745	8	7.6	8	83	3	63	84	11	3	1	0.81
373682--373736	9	6.2	9	78	16	53	85	10	3	0	0.72
373669--373730	1	62.0	1	77	0	52	87	6	6	0	0.68
375185--375680	29	16.9	29	86	2	677	28	29	16	24	1.97
375185--375675	59	8.4	59	93	0	770	28	29	16	24	1.97
375651--375731	28	2.8	27	79	9	72	33	25	19	20	1.97
375742--376156	43	9.1	43	83	9	461	26	23	17	32	1.96
375730--376205	49	10.1	47	79	11	462	25	23	17	33	1.96
375741--376156	92	4.5	89	83	10	475	25	23	17	32	1.96
376883--376954	32	2.2	33	87	5	101	36	9	11	43	1.73
376992--377016	13	1.9	13	100	0	50	32	16	16	36	1.90
377025--377153	52	2.5	52	96	0	240	36	17	17	28	1.93
380953--381146	59	3.3	59	79	5	180	27	24	13	33	1.94
380988--381146	59	2.7	59	81	3	205	28	23	13	33	1.93
381116--381295	52	3.5	52	75	1	146	25	24	13	36	1.93
381310--381570	52	4.8	52	75	13	172	25	25	14	34	1.93
381350--381631	114	2.5	114	85	4	356	25	25	13	36	1.92
381402--381647	61	4.2	61	75	10	224	24	24	12	38	1.90
382293--382350	19	2.9	20	82	5	73	44	12	12	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389136--389186	27	1.9	27	84	4	68	19	29	19	31	1.97
390942--391554	155	4.0	156	76	6	502	25	18	19	36	1.94
392745--393097	177	2.0	176	93	1	600	33	16	17	32	1.92
397581--397784	79	2.6	79	81	2	214	27	24	13	34	1.93
397740--397837	51	1.9	51	86	10	139	34	24	5	35	1.78
397643--397915	129	2.1	128	85	2	368	31	26	10	32	1.89
397600--397994	208	1.9	208	84	3	535	29	26	11	32	1.91
397772--398177	157	2.6	157	80	4	453	28	25	12	33	1.92
397789--398177	79	4.9	78	80	6	392	28	25	12	33	1.92
403637--403923	79	3.6	80	77	7	255	29	25	10	34	1.90
403861--403973	51	2.2	51	88	3	165	27	32	8	30	1.87
403778--404052	130	2.1	132	84	6	357	28	28	10	32	1.91
403909--404156	79	3.2	78	81	3	257	27	25	12	34	1.92
404004--404148	78	1.8	79	86	4	213	27	20	13	38	1.90
404288--404571	142	2.0	144	96	2	527	32	19	8	40	1.81
405381--405500	34	3.5	35	85	7	160	30	23	13	33	1.93
406757--406818	29	2.2	29	83	8	76	22	27	1	48	1.60
406953--407060	38	2.8	38	94	0	189	16	33	0	49	1.53
409000--409041	21	2.0	22	90	4	68	14	26	2	57	1.50
408999--409049	22	2.3	22	83	6	68	15	23	1	58	1.47
412449--412495	21	2.3	21	76	23	55	42	4	19	34	1.70
412616--412654	13	3.0	13	96	0	69	35	15	17	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412640--412718	20	3.7	20	78	15	77	44	15	15	25	1.85
414732--414762	15	2.1	15	93	0	53	12	22	16	48	1.80
416566--416610	21	2.1	21	84	8	56	22	20	4	53	1.63
418829--418854	13	2.0	13	100	0	52	30	15	15	38	1.88
423747--423800	20	2.6	21	85	11	76	31	18	9	40	1.82
424449--424578	34	3.9	34	86	6	169	30	21	12	36	1.90
427014--427111	48	2.0	48	100	0	196	33	20	12	33	1.90
427686--427807	56	2.2	56	86	4	167	40	16	11	31	1.84
429335--429386	19	2.6	19	77	17	52	80	5	9	3	0.99
430970--431022	26	2.0	26	81	0	61	26	26	9	37	1.87
431404--431552	59	2.5	58	79	6	156	17	12	18	52	1.74
431690--431763	30	2.4	30	84	6	87	25	17	9	47	1.78
431809--432058	94	2.6	94	81	5	265	21	18	14	45	1.84
432163--432220	30	1.9	31	89	3	91	25	17	10	46	1.79
431811--432526	95	7.6	95	75	8	369	23	18	12	45	1.83
432035--432463	185	2.3	186	82	6	499	24	18	11	45	1.82
431689--432558	95	9.2	95	74	5	321	24	18	11	45	1.83
439754--439799	17	2.8	17	75	15	51	50	6	0	43	1.28
440852--440876	13	1.9	13	100	0	50	36	16	16	32	1.90
440831--440895	33	2.0	32	88	8	96	30	15	15	38	1.88
440861--440917	19	3.0	20	82	7	73	33	17	17	31	1.93
440868--440917	20	2.6	19	87	3	64	32	18	18	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
440963--441014	13	4.5	13	73	26	62	32	13	17	36	1.89
440946--441014	33	2.1	32	89	10	104	30	14	18	36	1.91
448808--448871	20	3.2	20	97	0	119	26	18	14	40	1.89
448858--448930	19	3.8	19	88	1	101	28	12	17	41	1.86
448960--449024	33	2.0	32	85	11	87	33	13	18	33	1.90
450588--450795	97	2.1	97	88	2	310	28	9	30	31	1.88
452574--453039	61	7.5	61	82	6	510	23	29	15	31	1.95
452582--453039	92	4.9	91	82	7	508	23	29	15	31	1.96
452574--453046	217	2.2	215	87	3	662	22	29	15	32	1.95
452995--453298	95	3.2	92	82	7	313	19	30	13	36	1.90

Tables:   1   2   3   4