genome.fa.s494.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold494
Parameters: 2 7 7 80 10 50 1000
Length:  556777

Tables:   1   2   3   4   

This is table  4  of  4  ( 453 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453076--453267	60	3.1	61	79	10	199	19	30	13	36	1.90
453041--453298	33	7.9	33	78	9	271	19	31	12	36	1.90
453295--453762	49	10.0	49	73	11	374	26	24	17	31	1.97
453289--453575	92	3.1	92	89	1	412	26	25	16	31	1.97
453457--453524	21	3.2	21	63	19	50	25	26	17	30	1.97
453535--453707	87	2.0	88	89	1	267	26	24	20	28	1.99
459639--459817	95	1.9	91	87	7	232	35	15	11	37	1.83
462580--462605	13	2.0	13	100	0	52	30	15	15	38	1.88
462560--462623	32	2.0	33	87	3	94	28	14	17	40	1.88
464690--464732	20	2.1	20	82	4	50	11	25	41	20	1.86
465165--465202	13	2.9	13	96	0	67	31	15	18	34	1.92
467286--467316	15	2.1	15	93	0	53	12	22	16	48	1.80
469118--469162	21	2.1	21	84	8	56	22	20	4	53	1.63
471053--471111	32	1.9	30	83	13	75	59	10	10	20	1.58
471392--471417	13	2.0	13	100	0	52	30	15	15	38	1.88
471372--471435	32	2.0	33	87	3	94	28	14	17	40	1.88
473027--473093	31	2.2	30	81	7	73	38	1	4	55	1.29
473179--473249	22	3.0	24	73	21	69	54	1	0	43	1.08
479212--479257	23	2.0	23	91	0	74	30	17	13	39	1.87
483560--483586	2	13.5	2	100	0	54	48	0	0	51	1.00
484889--484923	7	5.0	7	100	0	70	28	42	0	28	1.56
491964--491994	16	1.9	16	93	0	53	41	3	9	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
492114--492141	13	2.2	13	100	0	56	7	50	7	35	1.57
492762--492866	20	4.8	20	72	21	93	29	15	12	42	1.83
492753--492847	50	1.9	50	88	0	145	28	16	11	43	1.83
493247--493292	24	1.9	24	100	0	92	32	13	4	50	1.61
493306--493338	17	1.9	17	93	0	57	33	6	21	39	1.78
496934--496959	13	2.0	13	100	0	52	38	15	15	30	1.88
499186--499230	21	2.1	21	84	8	56	53	4	20	22	1.63
501034--501064	15	2.1	15	93	0	53	48	16	22	12	1.80
503079--503158	20	3.8	20	75	15	79	26	15	15	43	1.85
503144--503182	13	3.0	13	96	0	69	30	17	15	35	1.91
503303--503349	21	2.3	21	79	20	55	34	19	4	42	1.70
503305--503347	20	2.2	19	84	16	52	32	18	4	44	1.71
505703--505728	13	2.0	13	100	0	52	38	15	15	30	1.88
508480--508514	2	17.5	2	87	0	52	48	2	2	45	1.32
509499--509536	20	1.9	20	100	0	76	31	18	10	39	1.85
513277--513315	13	3.1	13	85	7	53	46	0	2	51	1.14
513439--513500	21	2.8	23	75	22	69	56	0	0	43	0.99
513472--513527	29	1.9	30	89	7	89	57	0	0	42	0.99
513434--513530	44	2.2	44	77	18	105	56	0	0	43	0.99
513828--513861	18	1.9	17	88	5	50	64	0	0	35	0.94
515604--515628	13	1.9	13	100	0	50	32	16	16	36	1.90
515584--515648	33	2.0	32	85	11	87	32	16	15	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
515678--515730	19	2.7	20	91	2	81	35	16	16	30	1.92
516623--516689	33	2.0	33	85	0	89	26	14	31	26	1.95
518490--518514	13	1.9	13	100	0	50	32	16	16	36	1.90
524767--524815	13	4.0	12	84	10	64	32	18	18	30	1.95
524770--524815	24	1.9	24	95	0	83	34	19	17	28	1.94
527405--527443	13	3.0	13	100	0	78	38	15	15	30	1.88
528418--528488	24	2.9	24	76	4	70	25	23	7	43	1.79
529614--529640	13	2.1	13	100	0	54	29	14	14	40	1.86
529705--529736	13	2.5	13	94	0	55	34	15	12	37	1.85
531930--531972	20	2.1	21	83	12	54	51	6	16	25	1.69
535463--535502	13	3.0	13	88	3	62	35	17	15	32	1.91
535462--535502	14	3.0	14	89	3	66	34	19	14	31	1.92
535574--535598	13	1.9	13	100	0	50	32	16	16	36	1.90
541615--541784	79	2.2	79	89	0	250	32	13	25	28	1.94
541739--541812	28	2.6	29	87	6	116	27	21	29	21	1.99
541874--542159	51	5.6	51	84	5	305	32	11	25	30	1.91
541767--541942	79	2.2	80	92	2	293	28	17	28	25	1.97
541878--542160	101	2.8	102	85	4	392	32	10	25	30	1.90
544450--544562	20	5.7	20	85	8	142	43	12	15	28	1.83
544450--544562	40	2.8	40	90	2	165	43	12	15	28	1.83
544450--544562	60	1.9	60	88	3	174	43	12	15	28	1.83
545247--545309	19	3.6	19	72	24	75	33	19	14	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
545240--545309	32	2.2	32	94	0	131	34	18	14	32	1.91
546202--546438	49	4.9	49	80	8	279	33	18	24	24	1.96
546203--546385	101	1.8	101	91	0	303	33	18	24	23	1.97
546455--546722	28	9.5	28	85	8	282	20	17	29	32	1.95
546499--546727	84	2.7	84	87	6	322	21	17	29	31	1.96
548167--548234	1	68.0	1	76	0	64	1	1	8	88	0.65
548155--548234	14	6.1	14	75	18	75	1	1	11	86	0.70
548155--548235	25	3.3	23	83	10	90	1	1	12	85	0.73
548155--548234	26	3.2	24	80	20	92	1	1	11	86	0.70
548157--548234	28	2.7	29	84	11	99	1	1	11	85	0.71
549271--549479	79	2.7	78	82	3	258	29	16	30	23	1.96
549489--549663	52	3.4	51	78	14	171	32	11	25	31	1.91
549490--549876	51	7.4	51	70	15	243	32	12	24	30	1.92
549380--549879	262	1.9	265	88	3	760	31	13	25	29	1.93
549489--549710	103	2.2	103	82	3	259	32	12	24	30	1.92
549693--549768	27	2.8	27	87	2	98	23	21	30	25	1.99
552234--552259	13	2.0	13	100	0	52	38	15	15	30	1.88
552672--552883	119	1.8	116	81	11	261	40	15	25	19	1.90
553025--553112	26	3.3	26	67	14	70	20	17	34	28	1.95
552867--553760	55	15.3	59	86	7	1079	25	20	28	25	1.99
552871--553760	119	7.6	118	85	7	1062	25	20	28	25	1.99
554746--554803	1	58.0	1	77	0	53	0	6	5	87	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
554727--554803	11	6.7	11	75	15	59	0	12	3	83	0.79
554746--554804	13	4.8	13	87	8	72	0	6	6	86	0.71
554746--554803	16	3.6	16	85	0	71	0	6	5	87	0.65
554746--554803	9	7.2	8	80	16	59	0	6	5	87	0.65
554746--554800	12	4.4	12	86	9	67	0	7	5	87	0.68

Tables:   1   2   3   4

The End!