genome.fa.s496.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold496
Parameters: 2 7 7 80 10 50 1000
Length:  765014

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95061--95097	12	3.2	11	88	11	56	45	2	0	51	1.15
104645--104763	42	2.8	42	90	0	184	9	45	2	42	1.49
106602--106654	24	2.3	23	75	15	56	41	3	1	52	1.30
106641--106964	157	2.1	157	97	0	603	51	6	2	39	1.42
107328--107388	24	2.5	24	79	10	70	57	1	1	39	1.18
107416--107489	26	2.8	27	74	8	80	58	2	0	39	1.13
107416--107492	28	2.9	27	73	21	72	58	2	0	38	1.12
107734--107802	36	1.9	36	82	11	88	37	0	7	55	1.28
107789--107844	26	2.2	26	87	6	80	41	0	0	58	0.98
107820--107889	19	3.5	20	75	11	63	51	0	1	47	1.09
108057--108107	17	2.8	18	72	16	52	43	0	0	56	0.99
108078--108133	21	2.6	21	74	2	58	53	0	0	46	1.00
109199--109226	2	14.0	2	100	0	56	50	0	0	50	1.00
115068--115105	17	2.2	17	90	4	58	68	2	2	26	1.16
117484--117540	30	1.9	30	86	13	82	50	0	0	49	1.00
117771--117808	18	2.1	18	90	9	60	76	0	0	23	0.79
118916--119058	9	16.1	9	65	15	66	51	0	0	48	1.05
118921--119041	12	9.2	14	67	25	61	51	0	0	47	1.06
118917--119051	28	5.0	28	69	21	101	52	0	0	46	1.05
120493--120538	21	2.3	21	78	17	53	54	2	2	41	1.25
120684--120720	12	3.2	12	77	14	51	70	0	0	29	0.88
120878--120918	2	20.5	2	89	0	64	46	0	4	48	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121192--121265	30	2.5	29	78	8	78	37	6	1	54	1.36
124129--124176	23	2.1	23	85	11	64	77	0	12	10	1.00
124128--124179	24	2.3	21	81	15	59	75	0	11	13	1.06
125004--125041	13	2.9	13	81	11	51	60	0	0	39	0.97
125649--125703	21	2.5	21	91	5	83	47	0	0	52	1.00
127323--127358	2	18.0	2	100	0	72	50	0	0	50	1.00
128410--128446	2	18.5	2	100	0	74	48	0	0	51	1.00
129814--129851	19	2.1	18	85	14	51	36	2	0	60	1.11
129835--129874	20	2.0	20	85	9	55	50	0	0	50	1.00
130327--130369	20	2.2	20	86	0	59	37	4	13	44	1.65
131716--131757	2	21.0	2	100	0	84	50	0	0	50	1.00
132006--132207	64	3.2	60	72	17	162	48	0	0	50	1.11
132154--132197	17	2.5	18	82	14	56	52	0	0	47	1.00
132501--132543	13	3.2	13	78	18	52	25	0	4	69	1.07
132487--132548	23	2.4	27	84	10	78	24	0	4	70	1.06
132487--132551	27	2.7	23	76	17	67	24	0	4	70	1.06
132558--132630	21	3.7	21	82	10	59	36	0	1	61	1.05
132580--132619	8	4.8	8	85	11	53	35	0	0	65	0.93
132556--132624	29	2.3	31	82	7	88	37	0	1	60	1.06
132512--132650	18	7.4	19	70	16	94	33	0	2	62	1.15
132945--132982	14	2.6	14	87	4	58	23	0	0	76	0.79
132936--132981	22	2.1	22	84	8	58	26	0	0	73	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133478--133517	18	2.2	18	86	0	53	40	0	2	57	1.12
134079--134145	32	2.1	32	83	5	82	49	1	0	49	1.10
134100--134144	16	2.9	15	86	6	54	53	0	0	46	1.00
134825--134939	1	115.0	1	92	0	194	1	1	0	96	0.25
135720--135773	27	2.0	27	88	3	81	40	3	18	37	1.69
136311--136351	20	2.2	19	86	8	57	46	2	2	48	1.28
136506--136535	14	2.1	14	93	0	51	36	63	0	0	0.95
136581--136626	19	2.4	19	77	3	56	43	56	0	0	0.99
136654--136707	15	3.7	15	73	16	51	44	55	0	0	0.99
136596--136719	49	2.7	44	80	13	119	45	54	0	0	1.00
136736--136781	23	2.0	24	83	12	60	41	56	0	2	1.11
136800--136849	14	3.6	14	73	13	50	0	0	80	20	0.72
136847--136884	13	2.8	13	92	4	58	0	0	57	42	0.98
136871--136934	17	3.8	18	70	13	57	0	0	64	35	0.94
136951--137058	14	7.8	14	68	18	57	0	0	71	28	0.86
136954--137013	24	2.5	24	81	2	77	0	0	80	20	0.72
137136--137193	27	2.2	27	84	6	75	0	0	68	31	0.89
137196--137238	22	2.0	21	86	4	59	0	0	48	51	1.00
137183--137253	21	3.5	21	77	7	58	0	0	60	39	0.97
137309--137344	9	4.0	9	92	0	54	0	0	83	16	0.65
137307--137343	18	2.1	18	94	0	65	0	0	81	18	0.70
137202--137399	76	2.9	68	75	12	165	0	0	62	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137359--137388	14	2.1	14	93	0	51	0	0	46	53	1.00
137397--137509	13	8.6	13	68	22	51	0	0	61	37	1.02
137408--137447	8	4.7	9	82	17	50	0	0	70	30	0.88
137415--137478	16	3.7	17	78	17	78	0	0	68	31	0.90
137437--137463	12	2.2	12	100	0	54	0	0	77	22	0.76
137297--137504	115	1.8	115	80	12	257	0	0	62	36	0.99
137415--137480	8	8.8	8	79	12	61	0	0	68	31	0.90
137500--137580	22	3.6	22	75	17	78	0	0	75	24	0.81
137500--137583	34	2.4	34	76	15	82	0	0	73	26	0.83
137664--137709	1	46.0	1	100	0	92	0	0	0	100	0.00
137719--137774	29	1.9	29	85	7	78	55	44	0	0	0.99
139425--139466	2	21.5	2	95	4	77	47	0	0	52	1.00
140501--140533	2	17.0	2	93	6	59	48	0	0	51	1.00
140791--140852	14	4.3	14	72	22	56	32	3	3	61	1.28
142345--142387	20	2.2	20	86	0	59	37	4	13	44	1.65
143045--143083	17	2.1	20	81	18	57	41	0	2	56	1.13
143704--143745	2	22.0	2	90	9	70	50	0	0	50	1.00
143704--143750	17	2.7	17	90	3	76	48	0	2	48	1.13
143704--143744	15	2.7	15	96	0	73	48	0	0	51	1.00
147531--147568	13	2.9	13	81	11	51	60	0	0	39	0.97
148158--148221	22	2.9	22	84	11	78	45	0	0	54	0.99
148158--148221	23	2.9	22	79	13	69	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148158--148218	20	2.9	20	77	17	61	44	0	0	55	0.99
148163--148241	28	2.9	26	71	22	65	45	0	1	53	1.08
149885--149924	2	20.0	2	100	0	80	50	0	0	50	1.00
152324--152373	17	3.1	17	77	5	50	40	0	0	60	0.97
152337--152376	20	2.0	20	85	9	55	50	0	0	50	1.00
152833--152880	20	2.4	20	89	0	69	35	4	16	43	1.67
153356--153406	22	2.3	22	81	15	61	35	3	0	60	1.15
153646--153677	16	2.0	16	93	0	55	28	0	0	71	0.86
154029--154055	14	1.9	14	100	0	54	48	0	0	51	1.00
154220--154253	2	17.0	2	100	0	68	50	0	0	50	1.00
154988--155034	13	3.5	13	82	5	58	21	0	6	72	1.07
155023--155116	43	2.1	45	82	7	113	35	0	1	63	1.01
155077--155116	8	4.8	8	85	11	53	35	0	0	65	0.93
155053--155121	29	2.3	31	82	7	88	37	0	1	60	1.06
155010--155147	19	7.3	19	70	15	90	33	0	2	63	1.11
155444--155482	15	2.6	15	91	0	69	23	0	0	76	0.78
155982--156021	18	2.2	18	86	0	53	40	0	2	57	1.12
158911--159207	148	2.0	148	100	0	594	29	15	18	36	1.92
161627--161668	21	2.0	21	81	9	50	47	2	7	42	1.43
161821--162047	115	2.0	115	97	0	427	38	6	7	47	1.58
163197--163268	25	2.9	25	80	10	85	45	1	18	34	1.58
163194--163276	25	3.4	25	77	8	80	43	1	15	39	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164647--164704	29	2.0	30	86	3	82	60	3	3	32	1.30
166441--166768	164	2.0	165	90	1	525	23	14	12	49	1.78
166605--167656	209	5.2	206	81	6	1110	23	13	12	50	1.75
166607--167478	401	2.2	393	86	3	1007	23	12	12	50	1.75
172227--172288	30	2.1	31	88	11	94	40	1	3	54	1.26
172419--172458	20	1.9	20	85	10	53	47	10	0	42	1.37
172488--172553	30	2.2	31	83	2	80	54	0	0	45	0.99
172495--172539	22	1.9	25	86	13	69	60	0	0	40	0.97
172787--172844	9	6.3	9	79	16	66	55	0	3	41	1.17
172877--172931	23	2.5	21	74	11	56	50	0	1	47	1.11

Tables:   1   2   3   4   5   6   7