genome.fa.s496.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold496
Parameters: 2 7 7 80 10 50 1000
Length:  765014

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
653935--654094	37	4.4	36	72	15	123	49	6	5	39	1.50
654133--654185	29	1.9	29	81	11	67	43	0	7	49	1.31
654198--654243	19	2.5	19	89	3	67	39	6	0	54	1.26
654608--654675	32	2.1	32	86	5	93	38	10	13	38	1.78
662951--662992	2	21.0	2	95	0	75	47	0	0	52	1.00
665458--665532	28	2.7	28	80	13	84	58	4	1	36	1.25
667288--667342	29	1.9	28	88	3	83	52	0	3	43	1.18
667685--667753	26	2.8	25	82	6	86	39	8	5	46	1.59
667913--667956	22	2.0	23	90	4	72	63	0	2	34	1.07
667995--668088	39	2.7	33	72	23	84	46	8	5	39	1.57
667942--668101	37	4.4	36	72	15	123	49	6	5	39	1.50
668140--668192	29	1.9	29	81	11	67	43	0	7	49	1.31
668205--668250	19	2.5	19	89	3	67	39	6	0	54	1.26
668615--668682	32	2.1	32	86	5	93	38	10	13	38	1.78
669382--669505	62	2.0	61	88	1	185	26	16	14	42	1.86
670912--670950	13	3.0	12	85	14	51	69	0	0	30	0.89
670953--671024	11	6.4	11	72	19	51	54	0	2	43	1.15
670930--671001	32	2.2	33	87	7	103	55	0	0	44	0.99
670915--671037	20	6.3	20	66	26	61	56	0	1	41	1.09
671627--671701	13	5.5	15	71	20	58	40	0	0	60	0.97
671754--671803	3	17.0	3	95	4	93	34	0	0	66	0.92
674866--674964	19	5.2	19	73	17	64	49	6	1	43	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
674921--674964	19	2.4	19	85	14	65	40	9	0	50	1.34
677615--677673	25	2.4	25	83	8	77	40	0	0	59	0.97
677625--677673	23	2.1	24	85	11	66	38	0	0	61	0.96
678268--678301	15	2.3	15	89	0	50	35	2	5	55	1.39
680053--680186	67	2.0	67	88	2	198	38	14	9	38	1.79
682223--682375	34	4.9	34	80	18	204	41	37	0	20	1.52
682252--682307	22	2.5	22	97	0	103	41	41	0	17	1.50
682224--682351	56	2.2	57	93	4	213	42	38	0	19	1.52
687079--687166	9	8.2	10	68	26	56	42	38	0	19	1.51
687051--687176	67	1.9	67	98	0	243	42	37	0	20	1.53
687051--687180	34	3.9	34	95	2	235	42	36	0	20	1.53
688058--688147	30	3.0	30	81	0	117	36	23	11	28	1.89
692003--692122	62	1.9	62	89	0	186	48	16	15	20	1.81
692021--692121	31	3.3	30	72	5	94	48	15	15	19	1.81
692132--692195	26	2.4	26	81	5	65	42	15	7	34	1.76
692314--692374	30	2.0	30	87	9	88	54	11	14	19	1.71
692557--692648	30	3.1	30	76	9	107	38	18	9	33	1.84
694604--694643	21	1.9	21	85	10	55	40	0	0	60	0.97
694615--694681	35	1.9	35	85	11	93	49	0	0	50	1.00
694796--694848	25	2.2	23	80	6	61	26	0	9	64	1.24
700152--700262	30	3.7	30	86	4	161	29	16	22	31	1.96
700144--700256	60	1.9	60	90	3	183	30	15	23	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
701412--701461	14	3.5	14	76	15	57	62	0	2	36	1.07
702483--702525	3	14.3	3	85	0	59	32	4	2	60	1.30
702810--702846	8	4.3	9	86	6	51	24	0	0	75	0.80
706111--706151	17	2.5	17	88	11	59	48	0	0	51	1.00
706345--706385	17	2.4	17	79	0	55	39	2	7	51	1.43
711769--711937	42	4.0	42	78	5	189	34	20	26	17	1.95
713653--713692	21	1.9	21	100	0	80	32	10	17	40	1.83
713747--713771	13	1.9	13	100	0	50	36	16	16	32	1.90
715865--715936	26	2.6	28	85	8	96	23	34	20	20	1.96
715756--716143	55	7.4	51	72	13	261	30	25	11	32	1.91
716126--716202	28	2.7	30	86	7	108	24	31	18	25	1.97
715753--716253	266	1.9	264	89	4	776	29	25	12	32	1.92
716159--716357	78	2.5	77	83	4	229	24	28	16	31	1.96
725819--725882	25	2.5	26	73	16	71	45	0	1	53	1.10
727085--727115	4	7.8	4	100	0	62	77	0	0	22	0.77
727464--727504	18	2.4	18	84	8	59	34	0	0	65	0.93
728046--728091	17	2.7	17	83	9	58	41	0	0	58	0.98
728396--728461	24	2.7	25	82	13	77	57	0	0	42	0.98
728480--728509	12	2.5	12	94	0	51	63	0	0	36	0.95
729639--729677	3	13.0	3	100	0	78	0	33	0	66	0.92
729708--729735	3	9.3	3	100	0	56	32	0	0	67	0.91
729894--729942	17	3.1	17	82	11	68	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
729894--729944	16	3.1	16	88	2	66	64	0	0	35	0.94
730697--730745	23	2.0	27	84	15	70	53	6	0	40	1.26
731181--731219	2	19.5	2	100	0	78	48	0	0	51	1.00
731792--731843	15	3.3	16	78	10	54	57	0	1	40	1.10
731823--731876	15	3.5	15	78	9	54	57	0	0	42	0.98
731756--731875	32	3.8	32	67	18	90	56	0	1	41	1.09
732472--732502	10	3.1	10	90	0	53	41	0	0	58	0.98
732472--732510	20	2.0	20	89	0	60	51	0	0	48	1.00
732605--732636	16	2.0	16	93	0	55	37	3	6	53	1.42
733841--733870	3	10.0	3	92	0	51	63	0	36	0	0.95
734520--734601	23	3.8	21	72	20	62	41	0	2	56	1.13
735102--735153	24	2.1	24	82	3	59	50	0	1	48	1.12
735106--735162	29	1.9	30	82	3	71	52	3	1	42	1.28
736921--736954	10	3.5	10	88	8	52	79	0	2	17	0.86
737710--737750	16	2.6	15	81	11	55	26	2	0	70	0.99
739094--739139	9	5.0	9	89	10	67	76	0	0	23	0.79
739090--739131	17	2.4	18	92	7	70	78	0	0	21	0.75
739171--739243	23	3.2	22	77	12	69	58	2	0	38	1.12
739246--739303	27	2.2	25	85	11	73	55	0	1	43	1.10
739584--739633	24	2.0	25	88	3	75	46	0	0	54	1.00
739594--739652	24	2.5	23	77	20	59	45	0	1	52	1.10
748297--748368	36	2.0	36	88	0	108	40	12	4	43	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
749704--749733	8	3.6	8	91	8	51	86	0	13	0	0.57
749740--749780	6	6.8	6	79	20	50	31	0	0	68	0.90
749740--749787	24	2.1	24	88	7	73	31	0	2	66	1.03
749753--749827	37	2.0	39	82	10	93	34	1	2	61	1.18
750640--750677	19	2.1	19	90	5	60	13	5	13	68	1.37
751357--751406	16	3.4	16	69	25	56	24	6	8	62	1.46
751361--751420	27	2.2	27	96	0	111	25	3	8	63	1.38
751464--751538	13	5.4	14	75	13	66	44	0	0	56	0.99
751455--751528	27	2.8	26	76	15	71	41	0	0	58	0.98
751949--752018	36	1.9	36	85	5	97	38	0	2	58	1.13
752073--752145	30	2.4	30	83	0	101	45	2	0	52	1.15
752215--752257	16	2.7	16	83	16	54	53	2	0	44	1.13
752966--753021	16	3.3	17	78	14	53	66	3	0	30	1.09
752993--753042	10	4.8	11	74	20	54	78	0	0	22	0.76
752979--753042	22	3.0	20	82	13	76	75	1	0	23	0.90
752979--753042	19	3.0	21	80	13	78	75	1	0	23	0.90
752978--753043	29	2.2	29	82	12	80	74	1	0	24	0.91

Tables:   1   2   3   4   5   6   7

The End!