genome.fa.s5.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold5
Parameters: 2 7 7 80 10 50 1000
Length:  1536239

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  5  of  14  ( 1571 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
579848--579887	17	2.4	17	83	4	55	52	0	0	47	1.00
579863--579914	15	3.4	15	83	2	68	46	0	0	53	1.00
580096--580130	2	17.5	2	93	0	61	45	0	0	54	0.99
580967--581053	37	2.3	37	86	5	113	37	3	6	51	1.46
581604--581628	13	1.9	13	100	0	50	40	4	0	56	1.18
583171--583248	18	4.6	17	69	24	58	43	1	1	53	1.16
583195--583245	15	3.2	15	74	20	50	43	0	0	56	0.99
583191--583267	33	2.4	34	83	14	108	44	0	0	55	0.99
584167--584209	15	2.6	17	82	17	56	55	2	0	41	1.12
585135--585185	11	4.5	11	76	14	50	72	1	0	25	0.95
585132--585185	23	2.4	22	81	9	72	74	1	0	24	0.92
585125--585182	22	2.6	22	81	10	73	72	3	0	24	1.00
585402--585443	2	21.5	2	86	13	61	52	0	2	45	1.13
585534--585564	10	2.9	11	90	9	55	0	22	0	77	0.77
589054--589100	20	2.3	20	82	10	60	44	2	2	51	1.25
590524--590557	17	2.1	17	88	5	52	44	0	0	55	0.99
597362--597391	1	30.0	1	100	0	60	0	0	100	0	0.00
599778--599830	20	2.7	20	88	5	72	47	0	0	52	1.00
599780--599809	14	2.1	15	93	6	53	46	0	0	53	1.00
602198--602260	25	2.4	27	79	10	69	55	0	0	44	0.99
602207--602273	34	2.0	34	82	5	82	52	0	1	46	1.09
602292--602348	24	2.4	24	80	14	64	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
602313--602372	15	4.2	14	74	18	52	50	0	0	50	1.00
602493--602539	24	2.0	24	84	12	62	40	2	0	57	1.11
602994--603044	25	2.0	25	85	7	68	41	0	0	58	0.98
603038--603092	13	4.2	13	79	9	58	60	0	1	38	1.08
603053--603095	13	3.3	12	82	17	59	65	0	2	32	1.06
607121--607177	29	2.0	29	100	0	114	31	15	24	28	1.96
607587--607618	16	2.0	16	93	0	55	59	0	0	40	0.97
611811--611847	18	2.1	18	89	0	56	62	8	8	21	1.49
611838--611906	32	2.1	32	83	2	84	47	10	7	34	1.65
613432--613487	21	2.5	22	71	5	60	62	0	0	37	0.95
613952--614002	25	2.1	25	85	10	70	58	3	0	37	1.16
615424--615465	11	3.8	11	78	9	50	40	0	0	59	0.97
615566--615597	17	1.9	16	93	6	55	65	0	0	34	0.93
619691--619727	2	18.5	2	94	0	65	48	0	2	48	1.15
620456--620508	21	2.7	19	76	18	54	47	0	3	49	1.19
623674--623708	4	8.8	4	93	0	52	45	22	5	25	1.74
625874--625899	2	13.0	2	100	0	52	50	0	0	50	1.00
626305--626355	17	2.8	19	71	17	54	52	0	1	45	1.12
626620--626644	12	2.1	12	100	0	50	48	0	0	52	1.00
636355--636411	16	3.5	16	81	11	62	49	0	0	50	1.00
637399--637425	2	13.5	2	100	0	54	51	0	0	48	1.00
638018--638054	13	2.8	14	88	8	51	62	2	2	32	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
639196--639234	17	2.2	18	86	4	53	64	0	0	35	0.94
639185--639242	14	3.9	14	78	13	53	65	0	0	34	0.93
639226--639287	26	2.5	24	73	21	63	69	6	0	24	1.12
639442--639475	3	11.3	3	100	0	68	32	0	0	67	0.91
639927--639963	14	2.6	14	86	0	56	32	0	0	67	0.91
640099--640167	23	3.0	23	77	12	70	55	0	0	44	0.99
640449--640503	15	3.9	15	73	22	57	38	0	0	61	0.96
640441--640525	29	2.8	30	82	10	84	35	0	0	64	0.94
640439--640517	9	9.4	9	72	27	59	32	0	0	67	0.91
640472--640517	17	2.8	16	83	6	56	30	0	0	69	0.89
640620--640719	40	2.5	40	82	4	123	51	5	2	42	1.35
641578--641646	17	4.3	17	72	23	60	44	0	0	55	0.99
641602--641640	11	3.5	11	86	6	60	41	0	0	58	0.98
641602--641648	23	2.0	23	88	8	69	44	0	0	55	0.99
641963--641996	16	2.2	15	89	5	50	50	0	2	47	1.16
646255--646301	18	2.6	19	76	10	53	57	0	2	40	1.11
646648--646676	10	2.7	11	89	10	51	62	0	0	37	0.96
646646--646711	33	2.0	34	82	8	82	50	0	0	50	1.00
646693--646735	18	2.5	17	88	11	61	51	0	0	48	1.00
646693--646735	17	2.5	17	88	11	61	51	0	0	48	1.00
646714--646767	26	2.0	29	85	10	78	53	0	0	46	1.00
646926--646980	20	2.8	20	75	10	60	32	0	1	65	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
647835--647884	2	26.5	2	84	11	70	52	0	0	48	1.00
648786--648826	13	2.8	15	78	17	50	53	4	0	41	1.22
649303--649370	17	3.9	17	71	26	54	36	1	2	58	1.22
649301--649378	32	2.4	33	82	8	97	35	2	2	58	1.25
649638--649671	14	2.3	15	90	5	52	41	0	0	58	0.98
649637--649690	21	2.5	23	77	17	62	46	0	0	53	1.00
649696--649730	16	2.1	17	89	5	54	28	0	0	71	0.86
651337--651403	18	3.7	18	77	15	66	47	2	1	47	1.26
651337--651405	19	3.7	19	76	16	65	47	2	1	47	1.25
651316--651441	37	3.4	37	77	14	100	46	2	4	46	1.37
651932--652026	35	2.7	35	71	19	88	50	0	0	49	1.00
652939--652978	19	2.2	18	90	4	62	35	2	0	62	1.09
653240--653285	21	2.1	21	88	8	65	60	0	2	36	1.09
653235--653311	32	2.4	34	82	6	88	57	0	1	41	1.07
653699--653747	22	2.2	22	82	10	55	44	2	0	53	1.12
653956--653989	14	2.2	16	90	10	54	35	0	0	64	0.94
654186--654223	18	2.1	18	85	14	51	65	0	0	34	0.93
654194--654257	19	3.4	19	69	16	53	54	0	0	45	0.99
654302--654341	18	2.1	20	90	9	66	47	2	0	50	1.14
654690--654730	18	2.1	20	86	13	59	46	2	2	48	1.28
655067--655096	15	2.0	15	93	0	51	50	6	0	43	1.28
658436--658475	20	2.0	20	100	0	80	30	15	25	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
659156--659323	84	2.0	84	94	2	293	31	14	12	41	1.83
659367--659399	14	2.4	14	94	0	57	15	0	42	42	1.46
659782--659863	41	2.0	41	85	0	110	23	10	26	39	1.88
659738--660165	116	3.7	116	73	9	383	27	12	21	39	1.88
659730--660202	229	2.1	229	93	0	820	27	11	20	40	1.87
661247--661299	22	2.4	23	77	20	60	56	0	0	43	0.99
661507--661553	16	3.0	16	87	3	69	59	0	0	40	0.97
661707--661799	41	2.3	41	81	5	100	48	0	1	50	1.07
661750--661799	14	3.7	14	78	10	59	50	0	0	50	1.00
661766--661827	12	5.0	13	74	16	51	50	0	0	50	1.00
662227--662278	22	2.4	21	84	9	68	67	3	3	25	1.25
662670--662708	2	19.5	2	100	0	78	48	0	0	51	1.00
663215--663261	3	15.7	3	82	8	60	63	2	0	34	1.06
663617--663655	12	3.3	12	85	7	53	66	0	0	33	0.92
663817--663872	23	2.6	23	83	16	75	55	0	0	44	0.99
663817--663872	21	2.6	23	83	16	75	55	0	0	44	0.99
669041--669092	24	2.3	21	87	12	77	65	1	0	32	1.04
669291--669323	15	2.1	16	88	5	50	45	0	0	54	0.99
669357--669403	21	2.2	21	85	14	62	40	0	0	59	0.97
669542--669649	39	2.9	39	84	9	127	54	0	0	44	1.06
670357--670390	2	17.0	2	100	0	68	50	0	0	50	1.00
670390--670428	2	19.5	2	100	0	78	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
672293--672330	19	2.0	20	84	5	51	60	0	2	36	1.11
673531--673570	21	1.9	21	84	0	53	52	7	10	30	1.62
674184--674254	34	2.0	37	89	8	112	61	0	1	36	1.05
674178--674242	8	8.0	8	76	19	55	64	0	0	35	0.94
674776--674834	26	2.3	25	88	2	82	30	0	6	62	1.21
674788--674842	26	2.1	26	86	0	74	32	0	7	60	1.24
674857--674931	32	2.4	29	78	8	78	65	0	0	34	0.93
677352--677417	25	2.6	27	76	11	75	54	0	0	45	0.99
677354--677386	15	2.1	17	88	11	52	54	0	0	45	0.99
679025--679091	17	3.9	17	70	18	59	50	1	2	44	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14