genome.fa.s5.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold5
Parameters: 2 7 7 80 10 50 1000
Length:  1536239

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  6  of  14  ( 1571 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
682250--682311	28	2.2	28	83	11	74	45	3	0	51	1.17
682272--682327	20	2.6	22	77	11	71	50	0	0	50	1.00
683510--683560	26	2.0	24	85	7	66	31	0	5	62	1.19
683755--683791	3	12.3	3	100	0	74	67	0	0	32	0.91
684354--684416	22	3.0	21	81	11	58	47	1	0	50	1.10
684535--684600	22	3.0	21	76	17	62	37	1	3	57	1.23
684819--684847	2	14.5	2	100	0	58	51	0	48	0	1.00
686219--686260	22	1.9	22	90	0	66	45	2	0	52	1.13
687013--687058	16	2.8	16	78	21	51	52	6	4	36	1.47
688106--688141	16	2.2	16	90	0	54	33	0	2	63	1.08
688136--688235	30	3.3	31	71	12	89	49	0	0	51	1.00
688517--688587	18	4.0	18	83	9	101	63	2	0	33	1.09
688517--688579	8	7.4	8	77	19	65	63	3	0	33	1.10
688516--688586	13	6.1	12	69	16	51	64	2	0	32	1.08
688915--688989	18	4.2	18	77	10	73	61	1	4	33	1.23
689659--689715	23	2.5	23	80	2	62	45	5	0	49	1.24
692235--692299	24	2.6	26	76	14	73	55	0	0	44	0.99
692237--692269	15	2.1	17	88	11	52	54	0	0	45	0.99
693885--693951	17	3.9	17	72	18	59	52	2	1	43	1.25
699374--699405	14	2.3	14	94	0	55	53	3	6	37	1.42
699813--699843	2	15.5	2	100	0	62	51	0	48	0	1.00
701165--701206	22	1.9	22	90	0	66	45	2	0	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
701963--702003	16	2.6	16	78	21	50	53	4	4	36	1.44
703052--703088	16	2.3	16	85	0	56	32	0	2	64	1.07
703096--703173	30	2.7	29	75	16	88	47	0	0	52	1.00
703096--703160	29	2.2	28	81	13	69	47	0	0	52	1.00
703462--703532	18	4.0	18	83	9	101	63	2	0	33	1.09
703462--703524	8	7.4	8	77	19	65	63	3	0	33	1.10
703461--703531	13	6.1	12	69	16	51	64	2	0	32	1.08
703859--703932	18	4.2	18	77	13	73	62	1	4	32	1.22
703857--703922	33	2.0	33	88	5	98	63	0	3	33	1.10
703444--704216	412	1.9	407	88	3	1158	42	8	11	37	1.72
704592--704647	23	2.5	23	79	2	60	44	5	0	50	1.25
705237--705303	30	2.2	30	81	0	80	26	14	4	53	1.60
707173--707238	25	2.6	27	76	11	75	54	0	0	45	0.99
707175--707207	15	2.1	17	88	11	52	54	0	0	45	0.99
708843--708886	17	2.5	17	85	14	54	54	0	0	45	0.99
713330--713404	24	3.0	24	79	7	69	37	0	4	58	1.17
713373--713417	14	3.5	14	71	22	53	51	0	0	48	1.00
713370--713426	24	2.4	24	100	0	114	47	0	0	52	1.00
713554--713593	20	2.0	21	85	5	55	42	0	0	57	0.98
713598--713637	3	13.3	3	100	0	80	67	0	0	32	0.91
714199--714261	22	3.0	21	81	11	58	47	1	0	50	1.10
714380--714445	22	3.0	21	76	17	62	37	1	3	57	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
715492--715528	16	2.3	16	85	0	56	32	0	2	64	1.07
715862--715940	18	4.4	18	88	7	126	63	0	1	35	1.03
715862--715940	8	9.0	8	77	20	70	63	0	1	35	1.03
715862--715964	28	3.8	27	75	19	90	59	0	1	37	1.15
716546--716598	19	2.8	20	74	8	56	64	1	0	33	1.05
716571--716623	25	2.0	27	85	7	74	56	1	0	41	1.10
716593--716646	23	2.4	23	81	3	56	44	3	0	51	1.19
716531--716625	32	3.0	31	74	9	84	57	2	0	40	1.10
717238--717304	30	2.2	30	81	0	80	26	14	4	53	1.60
719177--719242	25	2.6	27	76	11	75	54	0	0	45	0.99
719179--719211	15	2.1	17	88	11	52	54	0	0	45	0.99
720841--720886	17	2.6	18	86	13	60	52	0	0	47	1.00
726326--726357	14	2.3	14	94	0	55	53	3	6	37	1.42
728083--728124	22	1.9	22	90	0	66	45	2	0	52	1.13
728878--728918	16	2.6	16	78	21	50	53	4	4	36	1.44
729966--730001	16	2.2	16	90	0	54	33	0	2	63	1.08
730012--730051	19	2.2	18	86	4	53	47	0	0	52	1.00
730038--730077	15	2.6	16	80	19	57	60	5	0	35	1.19
730335--730412	18	4.4	18	85	11	117	62	0	1	35	1.03
730335--730412	8	9.0	8	76	18	68	62	0	1	35	1.03
730334--730412	15	5.2	15	77	17	74	63	0	1	35	1.03
730334--730409	33	2.3	33	88	4	118	63	0	1	35	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
731016--731068	19	2.8	20	74	8	56	64	1	0	33	1.05
731041--731093	25	2.0	27	85	7	74	56	1	0	41	1.10
731063--731116	23	2.4	23	81	3	56	44	3	0	51	1.19
731001--731095	32	3.0	31	74	9	84	57	2	0	40	1.10
731708--731774	30	2.2	30	81	0	80	26	14	4	53	1.60
733646--733711	25	2.6	27	76	11	75	54	0	0	45	0.99
733648--733680	15	2.1	17	88	11	52	54	0	0	45	0.99
735317--735362	17	2.6	18	86	13	60	52	0	0	47	1.00
740801--740832	14	2.3	14	94	0	55	53	3	6	37	1.42
741218--741249	2	16.0	2	100	0	64	50	0	0	50	1.00
741249--741283	2	17.5	2	100	0	70	51	0	48	0	1.00
742580--742621	22	1.9	22	90	0	66	45	2	0	52	1.13
743040--743081	15	2.9	15	86	10	61	47	0	0	52	1.00
744460--744518	22	2.7	23	81	7	77	28	1	0	69	0.98
744530--744599	32	2.2	32	87	10	99	48	0	0	51	1.00
744533--744599	31	2.1	34	83	13	88	49	0	0	50	1.00
744526--744593	30	2.3	28	76	23	77	50	0	0	50	1.00
744875--744938	9	7.3	9	73	19	64	62	1	3	32	1.20
744873--744938	18	3.8	17	86	9	89	62	1	3	33	1.20
744873--744946	34	2.1	34	87	7	105	62	1	2	33	1.18
744873--744947	9	8.5	8	74	21	62	61	1	2	34	1.18
747729--747767	20	2.0	20	84	0	51	41	12	5	41	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
749114--749144	15	2.1	15	100	0	62	74	6	0	19	1.03
749876--749909	18	1.9	18	94	5	61	47	2	2	47	1.32
754393--754452	25	2.3	26	83	8	70	53	1	1	43	1.20
754590--754634	3	15.0	3	95	0	81	68	0	0	31	0.89
757129--757175	13	3.9	13	76	21	57	44	0	0	55	0.99
757586--757618	15	2.1	16	94	5	59	42	0	0	57	0.98
757640--757685	17	2.7	18	80	6	60	56	0	0	43	0.99
758530--758570	17	2.4	17	88	8	57	60	0	0	39	0.96
758975--759021	16	2.8	16	76	17	51	34	0	0	65	0.93
758994--759094	30	3.3	30	73	22	86	46	0	0	53	1.00
758982--759026	18	2.5	19	78	10	58	40	0	0	60	0.97
759376--759421	9	5.3	9	80	19	62	65	0	0	34	0.93
759374--759429	18	3.3	17	81	13	71	64	0	0	35	0.94
760048--760077	13	2.3	13	94	0	51	66	0	0	33	0.92
762204--762248	17	2.5	18	89	7	65	51	8	0	40	1.33
762462--762512	18	2.8	18	72	16	52	45	0	7	47	1.32
762662--762707	24	2.0	23	86	4	65	47	2	0	50	1.13
764772--764810	18	2.2	18	85	0	51	64	0	0	35	0.94
764783--764828	21	2.2	21	84	7	58	56	2	4	36	1.31
765397--765463	12	6.0	12	73	19	56	32	0	0	67	0.91
765389--765450	31	2.0	31	90	6	99	35	0	0	64	0.94
767305--767352	25	1.9	25	82	0	60	41	4	2	52	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
767409--767481	20	3.7	19	74	20	53	32	0	1	65	1.01
767465--767497	17	1.9	17	93	0	57	48	3	0	48	1.17
767507--767557	19	2.7	18	79	11	57	47	1	0	50	1.12
768685--768736	26	2.0	26	85	7	70	55	0	0	44	0.99
768814--768896	25	3.8	22	69	22	66	54	0	0	45	0.99
768808--768870	25	2.5	25	82	14	69	53	0	0	46	1.00
768867--768893	13	2.1	13	100	0	54	55	0	0	44	0.99
768956--768997	20	2.1	20	86	8	59	42	0	0	57	0.99
769182--769223	21	2.0	21	81	9	50	50	0	2	47	1.14
769218--769264	12	3.4	15	75	22	57	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14