genome.fa.s510.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold510
Parameters: 2 7 7 80 10 50 1000
Length:  507550

Tables:   1   2   3   4   

This is table  1  of  4  ( 427 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1198--1272	37	2.1	37	92	2	125	33	10	6	49	1.64
1307--1370	22	3.0	20	78	13	74	26	7	0	65	1.19
1786--1822	15	2.7	13	84	15	56	81	0	18	0	0.70
1788--1842	17	3.2	17	81	2	65	78	0	20	1	0.85
3054--3110	20	2.8	20	89	0	78	29	15	10	43	1.80
6592--6699	57	1.9	57	84	3	146	24	9	14	51	1.71
6767--6918	58	2.6	58	79	0	169	28	11	12	47	1.76
6940--7052	60	1.9	58	85	7	156	29	10	7	53	1.62
6940--7071	60	2.2	60	81	9	146	28	10	6	53	1.61
7722--7799	29	2.8	27	70	21	70	56	0	5	38	1.22
9535--9585	21	2.4	21	78	15	52	50	0	1	47	1.12
10065--10104	19	2.0	20	85	4	55	55	0	7	37	1.29
10343--10389	23	2.0	23	92	8	78	72	0	0	27	0.85
10346--10389	12	3.8	12	85	8	65	72	0	0	27	0.85
10474--10525	24	2.2	25	83	13	65	67	7	0	25	1.17
10574--10606	16	2.0	17	88	5	50	75	0	0	24	0.80
10616--10666	10	4.7	11	77	18	54	1	21	0	76	0.88
10623--10666	22	2.0	21	91	4	70	2	20	0	77	0.88
10612--10664	27	1.9	28	85	11	74	3	20	0	75	0.96
10623--10673	10	4.9	10	76	13	50	1	23	0	74	0.92
10986--11023	2	19.5	2	94	5	69	50	0	0	50	1.00
11027--11068	18	2.3	18	100	0	84	50	9	11	28	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13422--13458	13	2.8	13	87	0	56	45	0	0	54	1.00
13499--13551	25	2.1	24	83	13	63	52	1	1	43	1.23
17438--17473	17	2.1	17	89	0	54	8	19	19	52	1.70
17530--17691	36	4.3	36	66	20	98	10	14	25	49	1.75
17479--17649	78	2.2	78	89	0	252	13	12	25	49	1.77
17724--17783	22	2.7	22	86	0	75	13	10	28	48	1.74
17825--17875	19	2.6	19	84	9	59	11	7	9	70	1.33
19780--19805	13	2.0	13	100	0	52	38	15	15	30	1.88
19761--19825	33	2.0	33	87	6	96	41	16	13	27	1.87
24083--24135	13	4.1	13	87	0	79	39	13	13	33	1.83
30265--30318	20	2.7	21	85	8	76	35	18	12	33	1.89
30347--30402	19	2.9	19	89	2	76	35	16	16	32	1.90
30387--30413	13	2.1	13	100	0	54	40	14	14	29	1.86
34301--34369	30	2.3	30	80	2	86	34	1	7	56	1.36
43516--43586	26	2.9	24	77	12	63	38	0	0	61	0.96
44730--44754	2	12.5	2	100	0	50	48	0	0	52	1.00
45618--45664	11	4.2	12	84	10	55	25	0	2	72	0.96
46515--46550	18	2.0	18	89	10	56	44	2	2	50	1.31
46581--46626	17	2.8	17	80	12	60	43	0	0	56	0.99
46895--46924	9	3.3	9	100	0	60	33	0	0	66	0.92
47755--47796	17	2.3	18	88	8	59	57	2	0	40	1.12
52546--52836	148	2.0	145	88	5	435	29	19	19	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54836--54891	24	2.3	25	81	9	71	42	1	0	55	1.10
54949--54973	13	1.9	13	100	0	50	48	4	0	48	1.20
54949--55008	31	1.9	31	89	0	93	36	3	0	60	1.14
57473--57524	18	3.3	18	65	34	55	42	17	0	40	1.49
58591--58628	20	1.9	20	88	0	58	39	0	2	57	1.12
60333--60511	88	2.0	88	86	0	250	31	14	17	35	1.90
61159--61258	39	2.6	39	78	13	109	57	3	1	39	1.21
61561--61595	2	18.0	2	91	5	54	51	2	0	45	1.16
63468--63523	17	2.8	20	84	12	64	8	7	8	75	1.21
63517--63600	44	1.9	44	92	0	141	26	1	20	52	1.54
64127--64171	20	2.2	21	80	7	58	42	2	0	55	1.12
64395--64478	16	5.2	16	72	0	69	15	9	26	48	1.75
64453--64484	16	2.0	16	93	0	55	21	12	21	43	1.86
65590--65640	16	3.2	16	78	10	61	41	1	0	56	1.10
65999--66060	22	2.9	21	80	4	61	19	4	6	69	1.29
67157--67191	15	2.4	15	95	4	63	17	20	5	57	1.60
67219--67308	5	18.0	5	89	0	99	21	20	10	48	1.78
67216--67307	15	6.1	15	89	0	112	20	19	8	51	1.73
67216--67308	20	4.7	20	91	0	159	20	19	9	50	1.75
68642--68672	16	2.0	15	93	6	53	77	3	0	19	0.90
81163--81944	42	18.6	42	85	1	902	10	31	18	38	1.86
82073--82105	15	2.3	15	89	5	50	3	24	9	63	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82600--82734	5	27.0	5	90	0	153	20	20	10	48	1.78
82600--82734	15	9.0	15	89	0	180	20	20	10	48	1.78
82597--82734	20	6.9	20	89	0	204	20	19	10	50	1.76
84061--84091	16	2.0	15	93	6	53	77	3	0	19	0.90
87773--87818	23	2.0	23	100	0	92	30	8	26	34	1.86
91066--91275	50	4.2	50	88	0	303	30	19	18	31	1.96
93264--93310	2	23.5	2	100	0	94	51	0	0	48	1.00
95164--95230	33	2.0	33	88	0	98	34	11	13	40	1.81
95184--95208	13	1.9	13	100	0	50	36	16	16	32	1.90
95271--95295	13	1.9	13	100	0	50	32	16	16	36	1.90
95304--95431	52	2.5	52	92	3	206	33	16	17	32	1.93
99461--99493	10	3.4	10	83	8	50	33	0	6	60	1.21
99823--99847	13	1.9	13	100	0	50	36	16	16	32	1.90
99911--99935	13	1.9	13	100	0	50	32	16	16	36	1.90
99944--100072	52	2.5	52	96	0	231	34	18	17	28	1.94
103369--103554	30	6.0	29	81	11	192	22	29	15	32	1.95
103564--103912	34	10.8	33	76	9	317	20	30	12	36	1.90
103624--103869	61	3.9	61	87	4	314	21	30	12	35	1.90
103885--103980	30	3.3	29	84	7	124	34	31	16	17	1.93
103904--103990	28	2.9	30	80	16	101	33	28	17	20	1.95
104052--104387	39	7.9	39	72	17	251	26	24	20	28	1.99
104003--104644	87	7.0	87	88	5	748	24	25	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104351--104679	52	6.5	52	80	7	365	23	25	17	33	1.97
104351--104788	101	4.4	101	86	2	560	23	25	18	33	1.97
105536--105598	19	3.6	19	72	24	75	33	11	19	36	1.87
105536--105606	32	2.2	32	94	0	133	32	11	19	36	1.87
108944--108969	13	2.0	13	100	0	52	38	15	15	30	1.88
115139--115170	13	2.5	13	94	0	55	31	15	15	37	1.89
115292--115337	21	2.2	20	81	11	58	32	19	4	43	1.71
119691--119734	18	2.6	17	82	7	54	52	0	4	43	1.22
121442--121502	22	2.8	21	79	13	70	34	0	0	65	0.93
121429--121494	23	2.8	24	77	6	73	39	0	0	60	0.97
121961--121994	2	17.0	2	100	0	68	50	0	0	50	1.00
122029--122109	21	3.8	21	85	6	92	64	0	2	33	1.07
122041--122109	27	2.6	26	82	13	70	65	0	1	33	1.02
128027--128072	3	15.3	3	95	0	83	32	2	0	65	1.05
128297--128334	3	12.7	3	100	0	76	34	0	0	65	0.93
128522--128559	20	1.9	20	84	10	51	28	15	0	55	1.41
134071--134118	17	2.5	19	84	15	64	35	0	0	64	0.94
138597--138630	16	2.1	16	88	5	50	0	17	0	82	0.67
138594--138637	21	2.0	23	86	8	65	2	18	0	79	0.83
148819--148858	13	3.1	13	92	0	71	37	17	15	30	1.90
148940--149076	53	2.6	53	91	1	229	27	17	18	36	1.94
149046--149116	20	3.5	20	77	11	74	29	14	16	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149156--149196	21	2.0	21	85	9	57	39	9	12	39	1.76
149778--150013	115	2.1	115	100	0	472	25	25	5	44	1.74
150901--150925	13	1.9	13	100	0	50	32	16	16	36	1.90
151510--151556	23	2.0	24	84	12	62	61	19	4	14	1.49
154757--154893	53	2.6	53	90	1	220	26	17	17	38	1.92
154973--155013	21	2.0	21	85	9	57	39	9	12	39	1.76
155593--155627	14	2.4	14	95	4	61	57	20	8	14	1.63
156599--156649	17	3.0	17	75	11	50	41	0	5	52	1.25
160579--160655	38	2.0	38	100	0	154	31	7	31	29	1.86
162197--162236	18	2.2	18	86	0	53	20	10	27	42	1.83

Tables:   1   2   3   4