genome.fa.s510.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold510
Parameters: 2 7 7 80 10 50 1000
Length:  507550

Tables:   1   2   3   4   

This is table  4  of  4  ( 427 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
427222--427292	20	3.5	20	79	11	83	30	14	15	39	1.87
427332--427372	21	2.0	21	85	9	57	39	9	12	39	1.76
428367--428415	23	2.3	21	77	16	55	22	12	6	59	1.55
428376--428434	22	2.6	23	89	5	93	28	10	5	55	1.54
430332--430368	13	2.8	13	95	0	65	35	10	16	37	1.83
430678--430729	19	2.6	21	90	6	81	38	11	15	34	1.83
430785--430841	13	4.8	13	68	27	54	33	15	15	35	1.90
430761--430841	34	2.4	34	100	0	162	32	14	17	35	1.90
430818--430862	20	2.2	21	92	4	74	28	22	13	35	1.92
431717--431741	13	1.9	13	100	0	50	36	16	16	32	1.90
431697--431760	32	2.0	33	96	3	121	34	12	18	34	1.89
431696--431779	19	4.7	19	80	18	108	33	11	17	36	1.87
431855--431982	51	2.5	52	97	1	240	34	18	18	28	1.95
440086--440192	53	2.0	54	85	5	146	24	28	20	26	1.99
440116--440162	23	2.0	23	95	0	85	29	27	21	21	1.98
440162--440578	31	13.0	33	72	15	286	19	34	14	31	1.92
440237--440410	27	5.8	27	73	18	123	21	37	15	25	1.93
440162--440608	61	7.0	61	77	12	368	19	34	14	31	1.92
440610--440714	33	3.2	33	90	4	178	27	36	17	19	1.94
440229--440609	131	3.0	125	80	10	429	19	34	14	30	1.92
440729--440980	43	5.4	49	80	10	280	24	25	19	31	1.98
440709--440980	92	3.0	92	90	1	395	24	25	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441115--441387	43	6.1	43	78	9	285	26	24	16	32	1.96
441115--441431	92	3.4	92	92	1	481	26	23	16	33	1.96
442358--442382	13	1.9	13	100	0	50	36	16	16	32	1.90
442340--442438	32	3.1	32	89	1	144	39	10	14	36	1.79
442491--442637	52	2.8	50	83	11	197	33	19	17	29	1.95
447265--447340	27	2.8	28	87	2	100	23	36	21	18	1.95
447292--447498	79	2.6	79	92	0	342	24	28	17	28	1.98
447292--447527	79	3.0	78	88	4	339	26	27	15	30	1.96
449552--449582	4	7.8	4	92	0	53	22	0	3	74	0.96
459482--459539	5	11.6	5	80	15	59	84	13	1	0	0.70
459481--459539	6	10.5	6	85	7	72	84	13	1	0	0.69
459481--459539	11	5.3	11	85	6	66	84	13	1	0	0.69
459479--459546	10	6.7	10	81	11	68	85	11	2	0	0.71
459481--459546	29	2.2	30	86	10	91	84	12	3	0	0.72
460518--460712	55	3.5	55	80	8	230	27	27	19	25	1.99
460753--460933	55	3.1	59	82	11	237	25	28	18	27	1.98
460524--461135	209	2.9	208	88	4	845	25	27	19	27	1.99
460734--460920	55	3.3	54	81	12	223	27	26	20	24	1.99
460964--461257	61	4.8	60	89	2	390	26	24	19	29	1.99
461325--461532	61	3.5	60	77	10	212	25	26	20	27	1.99
461515--461648	42	3.1	42	80	5	126	17	26	12	42	1.86
461675--461768	42	2.3	40	83	7	109	19	27	11	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463562--463605	21	2.0	22	91	4	72	34	11	18	36	1.86
466185--466257	28	2.6	28	100	0	146	24	39	19	16	1.91
466215--466365	79	1.9	80	85	6	209	27	29	13	29	1.94
468783--468807	13	1.9	13	100	0	50	32	16	20	32	1.94
477369--477423	21	2.6	21	85	8	67	43	14	5	36	1.69
488968--488993	13	2.0	13	100	0	52	30	15	15	38	1.88
489032--489105	20	3.7	20	72	15	71	31	17	12	39	1.86
489032--489124	41	2.3	40	96	1	168	31	18	12	37	1.88
489052--489124	20	3.6	20	81	3	101	31	19	13	35	1.91
489416--489478	32	1.9	33	83	3	83	31	12	15	39	1.85
492002--492040	13	3.0	13	96	0	69	35	15	17	30	1.91
492026--492104	20	3.7	20	75	18	70	45	13	13	26	1.82
498202--498227	13	2.0	13	100	0	52	30	15	15	38	1.88
498266--498339	20	3.7	20	72	15	71	31	17	12	39	1.86
498266--498358	41	2.3	40	96	1	168	31	18	12	37	1.88
498286--498358	20	3.6	20	81	3	101	31	19	13	35	1.91
498650--498712	32	1.9	33	83	3	83	31	12	15	39	1.85
498306--499073	427	1.8	424	97	0	1342	35	14	11	38	1.83
501236--501273	13	2.9	13	100	0	76	36	15	15	31	1.90
503331--503361	15	2.1	15	93	0	53	12	22	16	48	1.80
505155--505205	20	2.6	21	85	14	74	23	19	3	52	1.62
507419--507444	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507399--507462	32	2.0	33	87	3	94	28	14	17	40	1.88

Tables:   1   2   3   4

The End!