genome.fa.s510.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold510
Parameters: 2 7 7 80 10 50 1000
Length:  507550

Tables:   1   2   3   4   

This is table  3  of  4  ( 427 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
269579--269645	33	2.0	33	88	0	98	25	14	16	43	1.86
272095--272167	27	2.7	27	87	6	94	23	34	21	20	1.97
272252--272333	28	2.9	28	82	7	96	24	30	17	28	1.97
284710--284772	10	6.4	10	78	7	58	85	4	9	0	0.72
284710--284773	15	4.3	15	78	4	67	85	4	9	0	0.72
284710--284757	1	48.0	1	78	0	51	89	6	4	0	0.58
285731--286414	55	12.4	55	91	3	1028	28	29	20	21	1.98
287010--287055	1	46.0	1	93	0	65	93	0	2	4	0.41
287007--287055	18	2.9	18	91	8	77	87	0	4	8	0.65
287060--287116	21	2.7	21	97	0	105	33	10	19	36	1.86
287172--287239	19	3.9	19	78	21	85	35	11	14	38	1.83
287193--287217	13	1.9	13	100	0	50	36	16	16	32	1.90
287174--287236	32	2.0	32	96	0	117	34	12	15	36	1.86
287279--287304	13	2.0	13	100	0	52	30	15	15	38	1.88
287259--287325	33	2.0	33	88	0	98	25	14	16	43	1.86
289774--289846	27	2.7	27	87	6	94	23	34	21	20	1.97
289931--290012	28	2.9	28	82	7	96	24	30	17	28	1.97
292517--292551	12	2.8	12	91	4	52	31	5	0	62	1.18
292700--292746	25	2.0	23	87	8	67	63	0	2	34	1.06
297384--297442	21	2.8	21	84	5	66	62	0	20	16	1.32
298520--298584	20	3.6	20	71	26	72	27	13	15	43	1.85
298540--298565	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
298519--298584	33	2.0	33	96	0	123	27	13	15	43	1.84
298663--298700	17	2.2	17	90	0	58	23	28	7	39	1.83
298665--298720	24	2.2	27	87	9	82	26	26	8	37	1.86
300151--300176	3	8.7	3	100	0	52	65	0	0	34	0.93
303315--303777	165	2.8	164	83	5	526	29	10	9	50	1.69
304468--304507	20	2.0	21	95	5	73	30	17	12	40	1.86
314473--314526	20	2.7	20	88	2	72	42	12	14	29	1.83
314492--314544	20	2.6	21	87	3	72	41	13	15	30	1.85
314613--314650	20	1.9	19	89	5	58	28	15	5	50	1.66
316101--316438	168	2.0	168	99	0	667	30	25	13	30	1.94
318114--318191	40	2.0	40	87	5	113	42	11	10	35	1.75
318213--318263	20	2.5	21	80	6	68	27	15	11	45	1.81
320618--320699	38	2.1	40	82	8	98	70	4	18	6	1.26
321452--321481	16	1.9	15	93	6	51	23	16	20	40	1.91
322476--323060	44	13.4	43	71	10	296	23	22	14	39	1.90
322817--322892	39	1.9	39	83	0	98	22	30	11	35	1.90
322783--322938	83	1.9	82	82	5	197	25	25	12	37	1.90
322476--323060	132	4.5	127	75	10	423	23	22	14	39	1.90
324249--324433	98	1.9	98	80	4	221	37	11	22	29	1.89
333031--333056	13	2.0	13	100	0	52	38	15	15	30	1.88
333011--333076	33	2.0	33	87	0	96	42	16	15	25	1.87
333167--333223	21	2.7	21	94	0	96	35	17	10	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335086--335205	8	15.4	8	71	21	62	73	3	1	21	1.07
335089--335161	21	3.4	22	73	16	71	71	2	1	24	1.07
335122--335162	12	3.7	12	75	18	52	75	0	0	24	0.80
335113--335198	21	3.8	24	73	14	83	74	2	1	22	1.00
335118--335163	10	4.7	10	82	12	60	73	0	0	26	0.83
335122--335207	22	4.0	22	79	13	81	75	2	1	20	0.98
335119--335198	35	2.4	31	77	18	88	75	2	1	21	1.00
338520--338578	31	1.9	31	85	0	82	44	5	22	28	1.74
339342--339697	28	12.5	28	81	5	320	24	17	28	29	1.97
339324--339584	115	2.3	114	83	3	317	25	17	27	29	1.98
339331--339698	143	2.6	142	82	6	406	24	18	27	29	1.98
339395--339698	115	2.7	112	82	5	308	25	17	26	29	1.98
340961--341027	1	67.0	1	72	0	53	0	0	13	86	0.57
340961--341048	10	8.5	10	81	17	74	0	2	14	82	0.76
340962--341026	29	2.2	31	78	13	73	0	0	13	86	0.58
340961--341048	32	2.9	29	77	17	72	0	2	14	82	0.76
342999--343037	20	2.0	19	95	5	69	35	23	10	30	1.88
343133--343157	13	1.9	13	100	0	50	32	16	20	32	1.94
349016--349047	8	3.9	8	95	4	55	12	0	25	62	1.30
349244--349282	13	3.0	13	96	0	69	35	15	15	33	1.89
351728--351752	13	1.9	13	100	0	50	32	16	16	36	1.90
351740--351792	21	2.6	21	82	11	65	39	16	15	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367901--367935	15	2.3	15	95	0	61	42	2	28	25	1.69
371739--371764	9	2.9	9	100	0	52	92	7	0	0	0.39
372993--373399	28	14.1	28	82	6	390	28	30	17	23	1.97
372987--373394	57	7.0	57	79	10	357	28	30	17	23	1.97
373832--373861	12	2.6	12	94	5	53	86	0	0	13	0.57
374407--374478	20	3.6	20	86	0	99	31	13	12	41	1.82
374354--374528	90	1.9	91	84	3	237	30	15	10	43	1.81
381282--381343	20	3.2	20	88	9	92	33	14	17	33	1.90
381286--381344	19	3.1	19	90	2	91	35	15	16	32	1.90
382302--382355	20	2.6	21	88	2	74	35	16	7	40	1.77
382783--383509	61	12.0	61	79	6	668	30	16	24	28	1.97
382781--383509	120	6.0	119	80	5	737	30	16	24	28	1.97
382781--383505	242	3.0	242	84	3	902	30	16	24	28	1.97
383471--383553	40	2.1	40	90	4	132	28	18	21	31	1.97
383351--383671	160	2.0	161	84	2	421	28	17	24	28	1.97
383511--383676	61	2.7	61	90	0	251	27	18	26	27	1.98
383786--383895	44	2.5	44	91	2	168	27	24	10	37	1.89
383785--383938	44	3.5	44	83	3	141	24	25	12	37	1.90
384040--384240	82	2.4	83	84	2	244	14	26	14	43	1.85
384131--384240	42	2.6	42	72	13	109	16	30	12	40	1.86
384128--384291	83	2.0	84	83	6	208	16	29	14	39	1.88
385567--385591	13	1.9	13	100	0	50	32	12	0	56	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
385445--385847	167	2.4	166	78	9	417	29	10	9	50	1.69
386330--386372	10	4.4	10	85	8	54	81	0	18	0	0.69
386327--386369	23	1.9	22	90	4	68	79	0	20	0	0.74
388412--388833	79	5.3	80	81	4	435	31	15	25	27	1.95
388434--388833	158	2.5	157	83	4	491	32	15	25	27	1.95
391786--391901	61	1.9	60	82	5	144	27	18	28	25	1.98
391961--392015	18	3.1	18	97	0	101	14	25	27	32	1.95
391997--392516	61	8.5	62	88	3	743	30	18	25	25	1.98
391997--392513	123	4.2	123	88	3	722	30	18	25	24	1.98
391782--392199	220	1.9	220	84	4	567	27	19	26	26	1.99
393616--393687	28	2.6	28	86	0	90	25	19	33	22	1.97
393675--393896	52	4.3	51	80	5	212	33	12	24	29	1.92
393879--393951	27	2.6	28	85	12	98	20	24	34	20	1.97
393571--394065	263	1.9	262	87	3	735	32	14	25	27	1.95
396429--396454	13	2.0	13	100	0	52	38	15	15	30	1.88
396408--396474	33	2.0	33	88	0	98	43	16	14	25	1.86
396494--396561	19	3.9	18	76	23	83	38	14	11	35	1.83
396516--396540	13	1.9	13	100	0	50	32	16	16	36	1.90
396497--396559	32	2.0	32	96	0	117	36	15	12	34	1.86
397763--397811	14	3.6	13	82	15	55	2	2	8	87	0.69
397763--397803	9	4.8	9	79	11	50	0	2	9	87	0.62
397764--397811	16	2.9	15	85	14	60	2	2	8	87	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401293--401335	13	3.0	14	83	16	61	34	16	16	32	1.91
412045--412460	79	5.3	78	79	6	374	33	15	24	26	1.95
418050--418327	138	2.0	138	93	2	479	37	11	20	30	1.88
419171--419232	21	3.0	21	71	2	54	27	16	17	38	1.91
419291--419344	20	2.7	20	91	2	81	33	11	11	44	1.75
424536--424560	13	1.9	13	100	0	50	84	0	16	0	0.63
425981--426048	33	2.1	33	86	10	95	32	17	13	36	1.89
426927--426965	13	3.0	13	84	0	60	35	15	15	33	1.89
427020--427070	21	2.4	22	93	6	95	37	11	23	27	1.90
427116--427252	53	2.6	53	92	1	238	27	16	17	37	1.92

Tables:   1   2   3   4