genome.fa.s513.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold513
Parameters: 2 7 7 80 10 50 1000
Length:  613464

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 487 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
267302--267340	15	2.6	15	91	0	60	51	15	20	12	1.76
269346--269424	20	3.7	21	75	15	72	26	13	15	44	1.84
269411--269449	13	3.0	13	96	0	69	30	17	15	35	1.91
271886--271958	20	3.6	20	77	3	92	36	13	17	31	1.89
271904--271979	21	3.7	21	78	3	100	43	11	15	28	1.83
271886--271979	41	2.3	41	100	0	188	40	12	17	29	1.86
272018--272043	13	2.0	13	100	0	52	38	15	15	30	1.88
273220--274039	409	2.0	410	93	1	1394	31	18	18	31	1.95
274602--274663	13	4.8	13	83	0	79	35	17	14	32	1.90
274602--274663	26	2.4	26	91	0	97	35	17	14	32	1.90
274775--274820	21	2.2	20	81	11	58	32	19	4	43	1.71
275095--275137	20	2.1	21	86	4	61	20	44	23	11	1.84
276426--276533	45	2.4	45	98	0	207	38	5	17	37	1.73
276507--276562	29	1.9	29	96	0	103	39	7	16	37	1.76
277330--277355	13	2.0	13	100	0	52	38	15	15	30	1.88
277312--277375	32	2.0	33	90	3	103	42	15	14	28	1.86
283091--283484	52	7.5	53	73	12	197	29	25	12	32	1.92
283205--283278	27	2.7	27	89	6	105	24	32	20	22	1.98
283263--283485	52	4.3	52	80	8	220	29	25	12	32	1.92
283468--283544	28	2.8	28	86	7	95	24	32	19	23	1.97
283094--283595	264	1.9	263	90	2	794	28	26	13	31	1.94
283498--283700	77	2.6	78	82	6	225	24	30	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
285558--285652	20	4.6	20	80	7	109	38	14	16	29	1.89
285618--285715	51	1.9	51	89	0	151	41	11	19	27	1.85
288173--288207	16	2.2	16	90	5	54	82	17	0	0	0.66
289422--289965	28	19.5	28	87	1	707	28	30	17	22	1.97
295231--295258	13	2.2	13	100	0	56	28	21	10	39	1.87
295415--295453	20	2.0	20	94	0	69	33	20	7	38	1.81
296040--296146	31	3.5	31	74	5	81	14	21	33	29	1.94
296431--296528	37	2.8	36	83	9	121	35	14	24	25	1.93
296431--296530	34	2.8	36	82	8	116	36	14	25	25	1.93
296335--296641	155	1.9	153	81	8	334	40	12	24	22	1.88
297893--298086	100	1.9	100	97	0	370	24	10	25	39	1.87
308448--308701	123	2.1	123	98	0	490	22	4	38	33	1.75
325914--326067	79	1.9	79	82	0	191	34	11	26	27	1.91
337504--337578	20	3.7	20	76	5	71	33	14	16	36	1.89
342118--342151	17	2.0	17	94	0	59	32	11	8	47	1.71
346342--346367	13	2.0	13	100	0	52	30	15	15	38	1.88
346321--346385	32	2.0	33	93	6	114	27	12	15	44	1.82
346321--346385	19	3.6	19	73	26	70	27	12	15	44	1.82
346439--346492	20	2.7	20	88	5	74	25	14	16	42	1.87
348442--348484	20	2.1	20	86	4	59	9	30	44	16	1.79
348916--348953	13	2.9	13	96	0	67	31	15	18	34	1.92
355071--355096	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355050--355114	32	2.0	33	93	6	114	27	12	15	44	1.82
355050--355114	19	3.6	19	73	26	70	27	12	15	44	1.82
355639--355694	20	2.7	22	78	16	82	32	8	17	41	1.81
355639--355696	21	2.8	21	82	12	84	31	8	17	43	1.79
355744--355869	41	3.3	41	68	17	115	34	15	17	32	1.91
355745--355921	74	2.4	74	86	4	243	34	14	16	33	1.90
355859--355883	13	1.9	13	100	0	50	44	16	8	32	1.76
359108--360230	571	2.0	570	86	1	1586	24	20	21	33	1.97
361752--361814	6	10.7	6	77	13	51	69	4	1	23	1.16
362674--362699	13	2.0	13	100	0	52	30	15	15	38	1.88
362738--362813	21	3.7	21	78	3	100	28	15	11	43	1.83
362759--362831	20	3.6	20	77	3	92	31	17	13	36	1.89
362738--362831	41	2.3	41	100	0	188	29	17	12	40	1.86
365269--365307	13	3.0	13	96	0	69	35	15	17	30	1.91
365293--365371	20	3.7	20	75	18	70	45	15	13	25	1.83
369431--369473	22	2.0	22	86	4	61	18	11	13	55	1.68
371478--371503	13	2.0	13	100	0	52	30	15	15	38	1.88
371542--371617	21	3.7	21	78	3	100	28	15	11	43	1.83
371563--371635	20	3.6	20	77	3	92	31	17	13	36	1.89
371542--371635	41	2.3	41	100	0	188	29	17	12	40	1.86
373148--373190	21	2.0	21	90	0	68	27	4	23	44	1.73
374675--374700	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376821--376874	20	2.7	20	88	0	72	37	12	16	33	1.87
378896--378944	20	2.5	20	90	6	73	36	20	12	30	1.89
378973--379026	19	2.8	20	91	2	83	37	18	14	29	1.91
378973--379043	20	3.6	19	86	7	72	38	16	15	29	1.90
379633--379676	3	14.7	3	90	0	70	38	0	31	29	1.58
381979--382052	20	3.8	19	82	5	76	29	12	17	40	1.86
382080--382166	20	4.7	19	73	21	78	33	11	18	36	1.87
382096--382125	13	2.3	13	94	0	51	36	16	13	33	1.88
382081--382145	33	2.0	33	93	0	112	33	12	18	35	1.88
390696--390773	26	3.2	26	77	17	96	48	0	20	30	1.50
391074--391128	20	2.8	20	88	5	76	40	12	14	32	1.84
391839--391878	20	2.0	20	95	4	73	30	10	15	45	1.78
391931--391957	13	2.1	13	100	0	54	29	14	14	40	1.86
391911--391974	19	3.7	18	74	25	66	26	14	15	43	1.85
391911--391974	32	2.0	33	93	3	112	26	14	15	43	1.85
392026--392081	20	2.8	20	89	5	78	28	17	16	37	1.91
394030--394072	20	2.1	20	82	4	50	9	27	44	18	1.80
396610--396640	15	2.1	15	93	0	53	12	22	16	48	1.80
400685--400748	32	2.0	33	87	3	94	28	15	15	40	1.88
400799--400871	20	3.7	20	92	3	112	31	19	16	32	1.94
401950--402696	49	15.9	49	73	11	472	30	17	26	25	1.97
401994--402328	101	3.4	98	82	8	399	30	17	28	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
402297--402544	48	5.8	39	68	17	145	28	19	26	25	1.99
402288--402699	43	9.3	43	71	15	293	30	17	25	26	1.98
402239--402691	92	5.0	91	88	3	616	30	18	25	26	1.98
402740--403100	33	11.3	32	75	13	298	36	13	30	19	1.90
402756--403062	60	4.9	61	78	11	300	37	13	30	18	1.90
402795--402979	93	2.0	92	87	4	264	36	14	30	18	1.90
402756--403100	126	2.7	127	86	5	443	37	13	29	19	1.90
402986--403039	27	2.0	27	85	0	72	27	12	33	25	1.93
403007--403100	34	2.8	33	75	9	100	35	11	31	21	1.89
402692--403101	159	2.6	161	76	12	423	36	13	30	19	1.90
402915--403085	94	1.8	92	82	7	220	36	12	30	20	1.90
403021--403856	30	26.6	32	78	9	764	33	14	29	22	1.94
403040--403850	95	8.6	94	82	5	801	33	14	29	22	1.94
403958--403987	8	3.6	8	91	8	51	26	0	23	50	1.50
410046--410377	52	6.5	52	81	5	302	32	17	25	24	1.97
410095--410706	87	6.6	93	83	8	611	29	18	26	25	1.98
410388--410706	48	7.1	47	73	15	309	28	19	25	26	1.99
410309--410706	178	2.3	174	87	3	537	29	20	25	25	1.99
410799--410877	25	3.1	25	83	7	95	27	16	31	24	1.96
410797--410881	27	3.2	27	85	6	111	30	15	31	22	1.95
410849--411627	34	23.8	34	74	14	586	36	12	31	19	1.89
410753--411057	128	2.5	122	83	6	355	34	13	32	19	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
410827--411627	95	8.2	95	75	12	655	35	12	31	20	1.90
410957--411009	27	2.0	27	92	0	88	24	15	35	24	1.94
410829--411080	128	2.0	128	88	1	380	34	13	31	19	1.91
410883--411174	94	3.0	95	78	8	254	36	12	31	19	1.89
411114--411226	32	3.6	30	82	8	100	35	14	31	18	1.91
410698--411677	34	30.3	31	71	16	352	35	12	32	19	1.90
411322--411375	27	2.0	27	85	0	72	25	11	37	25	1.89
411309--411601	61	4.7	62	72	19	221	35	10	32	20	1.88
411410--411562	27	5.1	27	74	18	126	35	12	31	20	1.90
411376--411505	60	2.1	63	87	5	194	38	10	31	19	1.86

Tables:   1   2   3   4   5