genome.fa.s6.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold6
Parameters: 2 7 7 80 10 50 1000
Length:  1308201

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94868--94892	12	2.1	12	100	0	50	40	0	24	36	1.55
96210--96239	2	15.0	2	100	0	60	0	50	0	50	1.00
99327--99357	1	31.0	1	100	0	62	0	0	100	0	0.00
105603--105631	2	14.5	2	100	0	58	0	48	0	51	1.00
105830--105866	2	18.5	2	94	0	65	45	0	54	0	1.00
106251--106316	17	3.5	19	77	12	64	40	1	3	54	1.25
107111--107144	3	11.3	3	100	0	68	64	0	0	35	0.94
107430--107485	20	2.6	23	78	18	66	42	0	1	55	1.10
107427--107484	29	2.0	29	86	6	82	46	0	1	51	1.11
107417--107818	222	1.8	223	85	4	569	42	4	5	47	1.50
107417--107847	223	1.9	223	83	5	559	42	6	6	45	1.53
110410--110476	33	2.0	35	88	5	102	40	0	1	58	1.07
110409--110460	24	2.1	25	89	3	79	42	0	0	57	0.98
110408--110471	14	4.6	14	77	14	60	40	0	1	57	1.08
110722--110803	25	3.5	24	75	18	68	42	1	1	54	1.15
110933--110977	20	2.2	21	88	11	67	57	0	0	42	0.98
110927--111056	59	2.2	59	80	12	133	53	0	0	46	1.05
111028--111092	15	4.2	15	70	14	51	60	1	0	38	1.07
111019--111094	32	2.4	33	80	10	86	60	1	0	38	1.05
111044--111097	27	2.0	27	89	7	83	61	3	0	35	1.14
111082--111133	14	3.7	14	80	10	54	57	3	0	38	1.17
111883--111917	16	2.3	15	95	5	61	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111879--111922	16	2.5	19	72	27	51	52	0	0	47	1.00
112288--112346	29	2.0	31	83	12	79	59	0	0	40	0.97
112302--112386	40	2.0	43	84	6	113	57	0	1	41	1.06
112366--112430	22	3.0	22	78	15	62	53	0	1	44	1.09
112396--112426	15	2.1	15	94	5	55	64	0	0	35	0.94
114371--114418	13	3.3	14	78	18	53	60	0	2	37	1.09
114320--114395	22	3.5	20	74	13	62	64	1	1	32	1.10
114339--114415	17	4.9	15	72	19	50	62	1	2	33	1.17
114464--114497	11	3.2	11	83	8	52	64	0	0	35	0.94
114464--114504	19	2.0	20	86	9	57	63	2	0	34	1.08
114607--114649	19	2.3	19	81	18	63	27	4	0	67	1.10
114609--114649	18	2.3	18	91	8	66	26	4	0	68	1.10
114752--114854	2	55.0	2	67	19	53	47	1	1	48	1.24
115113--115172	17	3.4	19	71	15	58	40	0	0	60	0.97
115119--115182	30	2.1	30	82	5	76	42	0	0	57	0.98
115520--115553	14	2.5	13	90	9	59	26	0	0	73	0.83
115974--116018	13	3.8	13	75	19	53	44	0	0	55	0.99
115981--116062	23	3.5	23	75	20	80	46	0	0	53	1.00
116585--116614	2	15.0	2	100	0	60	50	0	0	50	1.00
119557--119586	13	2.2	14	94	5	53	0	26	0	73	0.84
122600--122836	119	2.0	118	97	0	447	38	18	10	32	1.85
124330--124380	16	3.1	17	77	8	52	62	3	0	33	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126070--126108	19	2.1	19	90	0	60	38	0	0	61	0.96
126139--126229	5	18.0	5	73	18	73	56	1	0	42	1.06
126131--126229	36	2.8	35	77	10	103	55	1	0	43	1.06
126129--126248	52	2.3	53	80	11	131	53	1	0	45	1.10
126139--126223	21	4.2	20	75	14	75	55	1	0	43	1.07
126610--126654	21	2.1	21	84	8	56	46	0	6	46	1.29
126722--126776	27	2.0	27	86	6	76	50	0	1	47	1.11
126722--126776	14	4.1	13	82	17	60	50	0	1	47	1.11
126764--126813	22	2.3	22	89	0	73	52	2	0	46	1.12
126755--126810	22	2.8	19	75	15	58	50	1	0	48	1.11
126826--126910	25	3.3	26	71	18	70	49	2	1	47	1.22
127220--127252	14	2.5	13	90	9	50	48	3	0	48	1.17
127675--127716	22	1.9	22	100	0	84	40	16	4	38	1.70
127833--127887	10	5.4	10	81	12	67	32	0	1	65	1.03
127835--127896	5	12.2	5	75	16	56	33	0	1	64	1.03
128096--128186	42	2.2	42	88	4	130	37	19	18	24	1.94
134781--134815	15	2.3	15	90	5	52	2	5	5	85	0.81
139785--140340	290	1.9	289	88	3	841	30	15	16	37	1.90
147126--147197	36	2.0	36	89	5	110	31	20	26	20	1.98
147576--147612	2	18.5	2	100	0	74	48	0	0	51	1.00
149651--149687	2	18.5	2	100	0	74	48	0	0	51	1.00
150211--150249	20	2.0	20	85	10	53	30	5	7	56	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150386--150414	2	14.5	2	100	0	58	48	0	0	51	1.00
152251--152354	30	3.4	30	83	11	117	36	3	24	35	1.74
154600--154635	2	18.5	2	94	5	65	50	0	50	0	1.00
154773--154816	21	2.1	21	83	8	54	43	0	2	54	1.12
154786--154840	18	2.9	18	84	13	58	38	0	1	60	1.08
154851--154897	13	3.3	15	80	17	55	61	0	0	38	0.96
154855--154898	20	2.1	22	87	8	65	61	0	0	38	0.96
155725--155815	44	2.1	43	80	10	96	53	3	0	42	1.17
156398--156455	25	2.3	25	83	13	75	32	0	5	62	1.18
156535--156588	15	3.5	15	78	9	54	61	1	0	37	1.07
157654--157698	20	2.2	21	84	7	58	33	2	0	64	1.06
163343--163457	59	2.0	58	84	5	151	34	14	14	35	1.88
164096--164133	17	2.2	17	100	0	76	23	28	13	34	1.92
164294--164351	25	2.3	26	80	14	77	34	25	10	29	1.89
168249--168351	53	1.9	53	88	0	152	36	19	8	34	1.83
168477--168505	2	15.0	2	92	7	51	48	0	0	51	1.00
170098--170136	19	2.1	19	100	0	78	41	5	20	33	1.74
173231--173304	5	16.0	5	72	18	54	56	0	0	43	0.99
173240--173308	24	3.0	23	70	18	61	53	0	0	46	1.00
173273--173358	8	10.0	8	72	16	57	47	0	0	52	1.00
173226--173315	26	3.9	22	73	18	67	55	0	0	44	0.99
173266--173362	8	10.7	9	72	20	53	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173677--173720	23	1.9	23	86	9	63	43	0	0	56	0.99
173983--174037	29	2.0	26	89	10	83	14	12	3	69	1.33
173990--174048	29	2.1	28	80	3	64	20	15	5	59	1.55
174841--174881	18	2.3	19	80	20	52	63	0	0	36	0.95
175528--175754	108	2.1	108	90	3	350	39	11	12	36	1.80
176067--176096	10	3.1	10	95	4	53	56	0	0	43	0.99
176094--176143	21	2.5	20	79	20	61	38	0	0	62	0.96
176131--176181	22	2.4	20	74	22	50	52	0	0	47	1.00
176384--176409	2	13.0	2	100	0	52	50	0	0	50	1.00
177701--177751	15	3.5	15	82	15	63	60	3	0	35	1.15
177838--177921	34	2.5	34	80	1	89	33	9	23	33	1.87
178034--178125	28	3.2	28	75	15	89	48	0	0	51	1.00
178586--178612	2	13.5	2	100	0	54	51	0	0	48	1.00
178612--178643	2	16.0	2	100	0	64	50	0	50	0	1.00
178780--178805	5	5.2	5	100	0	52	38	0	0	61	0.96
179712--179755	17	2.6	17	79	13	54	47	0	4	47	1.22
179894--179931	17	2.2	17	86	13	51	31	0	2	65	1.06
179896--179952	18	3.1	18	78	14	53	42	0	1	56	1.10
180010--180048	17	2.3	17	86	8	53	33	5	0	61	1.18
180028--180079	23	2.5	20	87	12	77	30	0	0	69	0.89
180037--180081	18	2.5	19	78	10	58	31	0	0	68	0.89
180311--180378	19	3.4	20	74	10	59	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180310--180378	11	6.8	11	75	17	60	36	0	0	63	0.94
182972--182997	2	13.0	2	100	0	52	50	0	0	50	1.00
187238--187359	11	10.6	12	73	11	96	62	0	0	37	0.96
187267--187445	5	34.8	5	68	17	66	58	0	0	40	1.06
187238--187359	23	5.3	23	71	13	83	62	0	0	37	0.96
187250--187362	60	1.9	60	85	7	158	60	0	0	39	0.97
187315--187359	16	2.7	17	83	13	58	68	0	0	31	0.89
187311--187376	6	11.7	6	73	20	54	63	0	1	34	1.04
187261--187442	22	8.6	21	68	13	81	58	0	0	40	1.06
187571--187617	24	2.0	24	83	8	60	53	2	0	44	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11