Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold63
Parameters: 2 7 7 80 10 50 1000
Length:  2211945

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  16  of  16  ( 1834 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2172745--2172786
18
2.3
18
91
4
66
7
11
0
80
0.88
2172809--2172864
24
2.3
23
82
11
69
55
0
0
44
0.99
2173991--2174091
16
6.6
16
67
16
52
55
2
0
41
1.15
2174547--2174646
8
12.1
8
74
17
73
37
0
4
59
1.17
2174548--2174613
23
2.8
23
84
9
80
33
0
3
63
1.10
2174549--2174708
15
10.4
16
68
19
83
40
0
2
56
1.12
2174549--2174636
32
2.8
33
83
11
98
37
0
3
59
1.15
2174581--2174678
47
2.1
46
80
16
114
43
0
2
54
1.12
2175775--2175816
22
1.9
22
85
9
59
59
0
0
40
0.97
2178515--2178552
19
2.0
19
85
10
51
28
5
5
60
1.40
2179218--2179259
22
1.9
22
90
9
68
54
0
4
40
1.21
2179213--2179275
28
2.3
29
81
15
80
55
0
3
41
1.16
2179976--2180018
17
2.5
17
81
11
52
55
0
0
44
0.99
2180357--2180401
17
2.6
17
83
13
56
35
0
2
62
1.08
2180738--2180777
14
3.0
14
89
7
57
57
0
0
42
0.98
2180743--2180782
6
6.5
6
86
13
55
65
0
0
35
0.93
2181195--2181225
16
1.9
16
93
0
53
58
0
0
41
0.98
2181485--2181517
2
16.5
2
93
0
57
48
0
3
48
1.17
2182245--2182286
22
2.0
21
85
4
57
59
0
7
33
1.25
2182961--2182998
20
2.0
20
89
5
60
44
2
0
52
1.14
2187281--2187305
13
1.9
13
100
0
50
64
4
0
32
1.12
2187453--2187478
2
13.0
2
100
0
52
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2188282--2188311
12
2.5
12
94
0
51
36
0
0
63
0.95
2188267--2188311
19
2.3
20
81
11
58
33
0
2
64
1.06
2188500--2188535
16
2.2
17
90
5
56
30
8
2
58
1.42
2191221--2191301
23
3.6
22
72
11
67
48
1
0
50
1.08
2192301--2192326
2
13.0
2
100
0
52
0
50
0
50
1.00
2192326--2192367
2
21.5
2
95
4
77
50
0
0
50
1.00
2192413--2192456
22
2.0
22
95
0
79
45
15
18
20
1.85
2200344--2200386
20
2.2
20
87
8
61
72
0
0
27
0.85
2200342--2200402
27
2.3
26
88
2
95
72
0
0
27
0.85
2204651--2204686
18
2.0
18
88
0
54
2
13
0
83
0.76
2207673--2207902
109
2.0
114
84
6
299
21
24
7
46
1.77
2211525--2211593
23
3.0
23
79
10
77
59
1
0
39
1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16

The End!