genome.fa.s63.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold63
Parameters: 2 7 7 80 10 50 1000
Length:  2211945

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  2  of  16  ( 1834 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
238582--238692	52	2.2	51	80	8	118	47	0	0	52	1.00
240762--240804	22	2.0	22	81	4	52	44	0	11	44	1.40
245464--245504	17	2.3	19	87	8	59	48	0	0	51	1.00
257632--257671	20	2.0	21	85	5	55	37	10	0	52	1.35
258606--258669	2	32.0	2	96	0	119	48	0	51	0	1.00
259670--259876	69	3.0	69	94	1	342	36	22	14	27	1.93
264505--264550	10	4.5	10	78	5	56	34	0	0	65	0.93
264576--264614	11	3.7	10	86	10	51	35	2	0	61	1.10
264575--264616	16	2.6	17	81	7	52	38	2	0	59	1.10
266527--266574	24	1.9	26	83	8	64	33	8	0	58	1.28
269738--269787	12	3.9	13	76	19	52	40	6	10	44	1.63
269739--269790	27	2.0	26	96	3	95	40	3	11	44	1.59
269849--269881	9	3.7	9	95	0	57	45	18	33	3	1.65
274513--274562	12	3.9	13	76	19	52	40	6	10	44	1.63
274514--274565	27	2.0	26	96	3	95	40	3	11	44	1.59
274624--274656	9	3.7	9	95	0	57	45	18	33	3	1.65
283077--283109	2	16.5	2	100	0	66	51	0	0	48	1.00
286721--286773	3	17.7	3	96	0	97	33	1	33	30	1.69
287444--287474	5	6.2	5	100	0	62	41	0	0	58	0.98
287673--287721	25	2.0	25	88	8	73	51	0	0	48	1.00
287688--287739	16	3.2	16	78	5	61	48	1	0	50	1.12
287663--287721	22	2.7	22	78	19	61	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287808--287839	14	2.2	15	94	5	57	46	6	0	46	1.27
288521--288553	2	16.5	2	100	0	66	51	0	0	48	1.00
290043--290084	19	2.3	18	84	15	59	7	7	14	71	1.29
293472--293509	19	2.0	20	94	5	69	44	0	2	52	1.14
293463--293525	18	3.4	19	78	8	60	46	0	1	52	1.10
304058--304094	2	18.5	2	88	0	56	43	5	51	0	1.24
304058--304094	16	2.3	16	100	0	74	43	5	51	0	1.24
304434--304467	10	3.4	10	84	15	52	32	0	0	67	0.91
304430--304470	20	2.0	20	100	0	82	29	0	0	70	0.87
304675--304724	20	2.4	20	80	6	55	44	0	4	52	1.20
305243--305274	14	2.3	15	89	10	50	81	0	3	15	0.82
309430--309571	69	2.1	68	93	1	239	33	15	11	38	1.84
314313--314339	8	3.4	8	100	0	54	0	22	0	77	0.76
318366--318407	20	2.1	20	100	0	84	45	23	11	19	1.83
321522--321770	89	2.8	88	85	3	347	34	14	10	40	1.81
323373--323420	23	2.1	23	100	0	96	14	25	12	47	1.79
324943--324978	2	18.0	2	100	0	72	50	0	0	50	1.00
325484--325515	16	1.9	17	93	6	57	56	9	6	28	1.55
327452--327483	2	16.0	2	100	0	64	50	0	0	50	1.00
327820--327858	20	2.0	20	95	5	71	30	10	15	43	1.80
328866--328912	25	1.9	25	83	12	62	53	0	0	46	1.00
328901--328957	27	2.1	28	81	18	68	52	1	0	45	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328871--328987	42	2.8	41	78	13	98	55	0	0	43	1.05
328930--328964	18	1.9	18	88	11	54	51	0	0	48	1.00
328907--328961	26	2.2	24	81	15	60	52	1	0	45	1.11
328954--329020	18	3.6	18	78	8	64	59	0	0	40	0.97
328968--329025	10	5.9	10	75	17	50	63	0	0	36	0.94
329251--329277	4	6.8	4	100	0	54	74	0	0	25	0.83
329735--329781	14	3.0	15	75	19	51	53	0	0	46	1.00
329917--330015	8	11.4	8	70	23	51	41	0	3	55	1.15
329941--329991	22	2.2	22	86	6	66	45	0	1	52	1.12
329937--330029	25	3.7	26	67	28	58	43	0	2	54	1.12
334134--334170	2	18.5	2	100	0	74	48	0	0	51	1.00
334660--334703	21	2.2	20	83	4	52	61	0	0	38	0.96
335829--335911	32	2.5	33	86	7	107	54	0	0	45	0.99
335879--335928	17	2.8	19	82	14	70	58	0	0	42	0.98
335920--335959	20	2.1	19	85	4	53	72	0	2	25	0.97
335921--335959	14	2.7	14	88	4	51	71	0	2	25	0.98
336250--336317	21	3.1	21	83	8	75	50	0	1	48	1.10
336257--336326	18	3.7	18	72	24	56	51	0	1	47	1.09
336540--336592	21	2.6	20	82	11	63	37	0	0	62	0.96
336517--336581	17	3.8	17	72	14	53	41	0	0	58	0.98
336524--336605	20	4.1	20	69	18	64	39	0	0	60	0.96
337743--337780	20	2.0	20	89	5	60	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337865--337931	29	2.3	29	84	7	91	65	0	0	34	0.93
337947--337986	3	13.7	3	92	5	55	25	0	0	75	0.81
337946--338000	26	2.1	26	90	6	85	20	0	3	76	0.94
337953--337994	20	2.1	20	90	0	66	21	0	2	76	0.90
338406--338440	18	1.9	18	88	11	54	51	0	0	48	1.00
338402--338460	29	1.9	31	83	16	79	47	0	0	52	1.00
338438--338528	47	2.0	44	81	14	105	62	0	0	37	0.95
338478--338510	16	2.0	17	94	5	59	63	0	0	36	0.95
340078--340133	13	4.3	13	73	6	51	48	0	1	50	1.11
342186--342249	33	1.9	33	96	0	119	23	12	7	56	1.62
346454--346527	25	2.7	29	74	20	77	50	0	0	50	1.00
346456--346527	28	2.7	26	74	14	65	50	0	0	50	1.00
346621--346759	38	3.6	38	71	14	129	49	8	3	38	1.51
346603--346762	80	2.0	80	98	0	311	48	8	3	39	1.52
347801--347830	14	2.1	14	100	0	60	60	0	40	0	0.97
349722--349754	17	1.9	17	88	11	50	36	0	3	60	1.12
350023--350073	23	2.2	23	92	0	84	64	3	7	23	1.37
350410--350493	20	4.6	19	68	26	58	40	1	0	58	1.06
350444--350493	16	3.2	15	81	13	57	40	2	0	58	1.10
359842--359881	20	2.0	20	85	9	55	55	0	0	45	0.99
360586--360647	29	2.1	29	85	5	81	48	0	1	50	1.10
361345--361390	17	2.7	17	87	9	67	58	2	0	39	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369093--369133	17	2.4	18	80	12	50	56	0	0	43	0.99
370681--370709	2	14.5	2	100	0	58	0	48	0	51	1.00
376353--376405	27	2.0	27	85	7	72	50	1	0	47	1.12
376373--376430	14	4.0	14	75	14	55	56	1	0	41	1.09
376466--376570	23	4.8	22	71	21	60	54	0	0	43	1.13
379961--379988	2	14.0	2	100	0	56	50	0	0	50	1.00
381108--381155	15	3.1	15	79	11	53	52	0	0	47	1.00
381302--381346	6	7.5	6	79	0	54	55	0	2	42	1.12
381302--381347	24	1.9	24	90	0	74	56	0	2	41	1.11
381680--381738	27	2.1	30	84	9	79	40	0	1	57	1.09
381682--381753	27	2.6	26	78	10	72	43	0	1	55	1.08
381714--381771	21	2.8	21	75	12	57	41	0	1	56	1.09
381756--381795	11	3.8	11	78	21	50	35	0	0	65	0.93
382120--382177	20	2.9	21	85	10	68	60	0	1	37	1.07
382293--382336	22	2.0	22	100	0	88	40	0	0	59	0.98
382475--382517	16	2.8	16	86	13	63	58	0	0	41	0.98
382483--382517	17	2.1	17	94	5	63	60	0	0	40	0.97
382459--382546	44	2.0	43	84	6	115	54	0	0	45	0.99
386345--386405	12	5.3	11	74	16	52	40	0	1	57	1.08
386343--386409	35	1.9	35	100	0	134	38	0	2	58	1.14
404299--404393	44	2.1	45	88	7	140	48	8	5	37	1.56
411735--411812	33	2.3	34	82	8	88	50	0	3	46	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
411760--411791	14	2.1	16	88	11	50	53	0	3	43	1.16
412054--412121	27	2.4	29	79	16	79	51	0	1	47	1.09
413216--413258	20	2.2	20	100	0	86	55	4	18	20	1.60
417647--417731	31	2.8	32	75	18	83	50	0	1	48	1.08
417674--417740	17	4.2	16	72	24	52	53	0	1	44	1.09
427668--427702	18	2.0	17	88	5	52	20	37	11	31	1.88
429915--429946	16	1.9	17	93	6	57	62	0	3	34	1.11
431256--431295	2	20.5	2	84	5	55	45	0	0	55	0.99
431429--431476	2	24.5	2	95	4	89	47	0	0	52	1.00
431481--431535	28	2.0	28	85	7	76	43	0	1	54	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16