genome.fa.s680.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold680
Parameters: 2 7 7 80 10 50 1000
Length:  1139231

Tables:   1   2   3   4   

This is table  4  of  4  ( 462 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1003868--1004033	28	5.9	28	69	5	111	27	21	19	31	1.97
1003861--1004012	56	2.7	56	76	6	137	26	22	19	30	1.98
1003911--1004033	56	2.2	56	81	5	142	28	17	19	34	1.95
1004862--1004898	19	1.9	20	88	5	58	64	8	8	18	1.45
1006153--1006209	20	2.7	21	78	8	71	35	15	7	42	1.75
1008645--1008946	79	3.8	79	87	0	417	29	25	12	32	1.92
1008646--1008946	157	1.9	158	88	4	457	28	25	12	32	1.93
1008881--1009013	51	2.6	50	86	11	191	30	27	10	31	1.90
1008936--1009155	79	2.8	78	84	5	291	30	26	9	34	1.88
1008805--1009077	130	2.1	129	86	3	370	29	26	10	33	1.90
1008628--1009151	287	1.8	287	82	4	682	29	25	11	33	1.91
1018020--1018070	3	17.0	3	100	0	102	33	0	0	66	0.92
1024065--1024194	52	2.5	51	90	3	206	30	16	19	33	1.93
1024065--1024215	52	2.9	50	85	6	196	31	15	19	33	1.93
1024255--1024321	33	2.0	33	88	0	98	40	13	11	34	1.81
1024277--1024301	13	1.9	13	100	0	50	32	16	16	36	1.90
1026177--1026248	28	2.6	28	84	4	92	27	20	26	25	1.99
1026205--1026439	79	3.0	78	83	4	328	34	14	24	26	1.94
1029320--1029474	42	3.6	42	78	6	186	42	9	29	18	1.81
1029490--1029929	61	7.2	61	77	7	372	31	17	24	26	1.97
1030946--1030974	6	5.0	6	91	8	51	0	0	13	86	0.58
1031192--1031231	11	3.5	11	86	3	53	7	0	5	87	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1031192--1031242	25	2.0	26	84	3	68	7	1	5	84	0.85
1031979--1032057	39	2.0	39	95	0	140	37	11	18	31	1.87
1036192--1036262	27	2.6	28	95	2	126	28	25	28	18	1.98
1036220--1036451	78	3.0	77	77	5	250	34	14	25	25	1.94
1038697--1038828	50	2.6	50	87	0	183	43	12	16	28	1.84
1041023--1041054	3	10.7	3	100	0	64	31	0	0	68	0.90
1044422--1044464	2	21.5	2	100	0	86	48	0	51	0	1.00
1044453--1044601	76	2.0	76	98	0	289	37	10	20	32	1.86
1046041--1046132	15	6.0	15	78	8	69	52	4	6	36	1.47
1046103--1046133	16	1.9	16	100	0	62	58	12	3	25	1.50
1050217--1050275	18	3.2	18	76	13	59	54	1	0	44	1.10
1050227--1050293	16	4.2	16	78	12	59	56	2	0	40	1.14
1050427--1050461	16	2.2	16	89	0	52	51	17	0	31	1.45
1050463--1050501	16	2.5	16	91	4	62	64	0	0	35	0.94
1050800--1050903	41	2.5	39	77	13	102	34	2	2	59	1.27
1051109--1051167	2	30.5	2	81	6	68	52	0	0	47	1.00
1052269--1052340	19	3.8	18	73	10	56	76	6	2	13	1.10
1053140--1053172	13	2.5	13	95	0	57	51	42	6	0	1.26
1054091--1054444	79	4.5	79	81	4	410	25	25	14	34	1.94
1055317--1055341	13	1.9	13	100	0	50	32	16	16	36	1.90
1055297--1055361	33	2.0	33	90	6	105	30	20	15	33	1.93
1055391--1055440	19	2.6	19	87	9	66	40	16	16	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1057875--1057914	13	3.1	13	92	0	71	37	15	15	32	1.88
1061235--1061268	17	2.0	17	100	0	68	23	23	23	29	1.99
1064096--1064160	33	2.0	33	87	6	96	30	16	16	35	1.92
1064190--1064245	19	2.9	19	91	2	85	35	16	17	30	1.92
1069752--1069955	79	2.6	79	81	2	239	29	16	27	26	1.97
1069907--1069983	28	2.8	28	84	4	93	23	18	33	24	1.96
1069967--1070216	52	4.9	51	78	8	265	36	8	24	31	1.86
1069966--1070216	103	2.4	103	83	8	307	35	8	24	31	1.86
1070845--1071591	55	13.4	54	81	11	710	26	20	26	27	1.99
1070845--1071592	171	4.5	169	83	11	825	26	20	26	27	1.99
1071297--1071480	99	1.9	99	92	0	314	28	19	23	28	1.98
1071226--1071527	154	2.0	154	93	1	516	27	20	25	27	1.99
1072558--1072647	1	90.0	1	74	0	63	0	3	11	85	0.71
1072558--1072647	11	8.8	10	78	10	94	0	3	11	85	0.71
1072559--1072645	18	4.6	17	80	12	84	0	3	11	85	0.72
1072558--1072646	20	4.7	18	81	12	99	0	3	11	85	0.71
1082949--1082977	4	7.2	4	100	0	58	75	0	0	24	0.80
1085027--1085251	79	2.8	79	81	4	256	30	15	28	25	1.96
1085153--1085328	51	3.4	51	65	18	144	29	16	28	25	1.97
1085125--1085434	107	2.9	107	90	2	464	29	15	29	25	1.96
1085311--1085387	28	2.8	28	85	0	91	22	19	35	23	1.96
1085372--1085655	103	2.8	101	84	3	361	34	10	23	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1085370--1085656	51	5.6	51	81	1	331	34	10	24	31	1.89
1087996--1088021	13	2.0	13	100	0	52	38	15	15	30	1.88
1088074--1088123	19	2.5	21	90	6	77	32	14	14	40	1.85
1090621--1090682	32	1.9	32	87	6	90	41	14	14	29	1.85
1096839--1096877	13	3.0	13	96	0	69	30	17	15	35	1.91
1096998--1097043	21	2.2	20	81	11	58	32	19	4	43	1.71
1099429--1099454	13	2.0	13	100	0	52	38	15	15	30	1.88
1099410--1099474	33	2.0	33	84	6	87	43	16	12	27	1.84
1105669--1105729	32	1.9	32	90	6	97	27	11	16	44	1.82
1109555--1109679	52	2.4	52	91	0	205	28	16	17	36	1.92
1109555--1109700	52	2.8	51	86	4	195	30	16	17	35	1.92
1109740--1109809	33	2.1	33	89	0	104	40	14	11	34	1.82
1109765--1109789	13	1.9	13	100	0	50	32	16	16	36	1.90
1111904--1111936	13	2.5	13	95	0	57	39	15	18	27	1.90
1117445--1117621	71	2.5	71	97	1	329	32	15	15	37	1.88
1117609--1117634	13	2.0	13	100	0	52	30	15	15	38	1.88
1117589--1117652	32	2.0	33	90	3	103	28	14	15	42	1.86
1118780--1119131	28	12.5	29	82	5	361	27	28	19	24	1.98
1118781--1119215	56	7.6	56	78	9	375	27	29	19	23	1.98
1118781--1119131	84	4.2	83	83	4	400	27	28	19	24	1.98
1119138--1119215	32	2.5	31	82	10	97	28	37	16	17	1.92
1119283--1119510	62	3.7	62	74	8	216	23	27	13	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1119505--1119640	61	2.2	61	97	0	254	28	24	9	37	1.87
1119676--1119836	85	1.9	85	82	8	195	13	30	16	40	1.86
1120307--1120354	18	2.6	20	81	15	59	79	4	0	16	0.89
1120492--1120529	15	2.5	15	91	8	60	47	10	23	18	1.79
1122386--1122437	28	2.0	25	88	11	77	26	23	15	34	1.94
1122206--1122480	79	3.5	77	79	5	291	28	24	12	34	1.92
1126684--1126726	20	2.1	20	86	4	59	9	30	44	16	1.79
1127167--1127218	13	4.0	13	92	0	86	38	15	15	30	1.88
1133169--1133194	13	2.0	13	100	0	52	30	15	15	38	1.88
1133149--1133213	33	2.0	33	84	6	87	29	13	15	41	1.86
1134482--1134553	35	2.1	35	100	0	144	43	11	13	31	1.80
1135666--1135720	20	2.8	20	77	2	67	43	14	12	29	1.82
1136370--1136435	17	3.6	17	69	15	60	19	39	3	37	1.67
1136369--1136442	38	1.9	38	97	0	139	18	35	5	40	1.74

Tables:   1   2   3   4

The End!