genome.fa.s235.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168060.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_31, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  845463

Tables:   1   2   3   

This is table  2  of  3  ( 346 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
263731--265391	359	4.6	354	77	7	1271	40	8	9	41	1.68
263712--265366	537	3.1	531	77	7	1614	40	8	10	41	1.69
263701--265391	181	9.4	179	76	8	1299	40	8	9	41	1.68
282198--282618	209	2.0	209	100	0	842	38	19	19	23	1.93
300390--300755	158	2.3	158	80	1	367	22	28	23	25	1.99
319889--320122	90	2.6	91	77	5	233	25	29	24	20	1.99
320124--320327	45	4.5	45	65	9	119	23	24	28	24	2.00
320185--320369	90	2.1	90	80	2	201	22	22	28	25	1.99
320412--320510	45	2.2	45	78	3	110	19	23	35	22	1.96
320569--320674	45	2.4	45	79	6	108	19	18	35	25	1.95
321248--321554	149	2.1	149	85	1	409	26	24	26	22	2.00
321604--322087	170	2.8	169	80	7	489	23	25	25	26	2.00
330265--330462	90	2.2	90	81	3	229	25	28	22	23	1.99
331558--331892	150	2.2	149	85	2	431	28	24	25	21	1.99
332040--332600	171	3.3	171	79	2	484	22	21	26	29	1.99
335095--335146	24	2.2	24	90	6	81	19	44	9	26	1.81
340546--340761	45	4.8	44	77	4	189	22	28	29	19	1.98
340546--340761	90	2.4	90	82	4	258	22	28	29	19	1.98
340755--340897	44	3.2	44	79	4	162	25	34	23	16	1.95
340683--340937	89	2.8	89	80	7	275	24	30	23	20	1.98
340443--340928	45	10.8	45	74	3	188	23	29	27	19	1.98
346072--346104	18	1.9	17	88	11	50	48	6	6	39	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345790--346289	182	2.7	183	81	5	507	40	8	9	42	1.66
347112--347142	16	1.9	16	93	0	53	19	16	6	58	1.59
346306--350178	181	21.6	181	76	7	3100	40	8	10	41	1.70
346306--350178	542	7.2	538	75	7	3004	40	8	10	41	1.70
350427--350473	18	2.7	18	74	12	53	40	12	4	42	1.63
350432--351073	180	3.6	177	78	5	639	37	11	9	41	1.73
350970--351192	120	1.9	119	88	2	340	32	13	8	46	1.72
350796--351372	297	1.9	295	81	4	683	37	10	8	42	1.71
351070--354839	180	21.1	181	78	6	3399	40	9	8	41	1.68
351070--354839	361	10.5	362	78	6	3457	40	9	8	41	1.68
354878--356272	181	7.8	180	76	7	1023	41	10	8	39	1.69
355041--355715	356	1.9	358	81	2	838	41	10	8	40	1.69
353951--355778	937	2.0	932	81	4	2135	40	10	8	40	1.70
356074--356098	11	2.3	11	100	0	50	48	0	0	52	1.00
356375--356774	181	2.3	176	81	7	447	41	9	7	40	1.67
357127--359616	180	14.0	176	75	9	904	41	8	8	41	1.66
357621--359655	181	11.3	180	78	6	1768	41	8	7	41	1.65
357621--359655	360	5.7	360	77	6	1726	41	8	7	41	1.65
359514--359795	144	1.9	146	81	10	335	46	11	6	36	1.65
360547--361495	180	5.3	177	74	9	558	42	9	8	39	1.68
360724--361495	355	2.2	356	78	7	773	42	9	7	40	1.66
361452--361699	131	1.9	131	88	4	374	44	8	7	39	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361585--362531	178	5.5	174	72	14	651	41	8	8	41	1.65
363609--365454	179	10.4	178	75	10	1276	40	10	8	40	1.70
363609--365454	180	10.4	176	75	10	1314	40	10	8	40	1.70
364619--364648	16	1.9	15	93	6	51	56	6	16	20	1.62
363609--365314	699	2.4	700	78	9	1705	40	10	8	40	1.70
363609--365454	531	3.5	518	75	10	1611	40	10	8	40	1.70
365199--365718	270	1.9	268	83	5	665	41	9	7	40	1.67
365649--365681	18	1.9	17	88	11	50	39	6	6	48	1.53
365465--366245	181	4.4	180	75	8	578	41	9	8	40	1.67
370790--371169	45	8.4	45	69	5	196	21	29	27	21	1.98
370797--371007	90	2.3	89	81	5	228	21	28	29	20	1.98
379251--379876	171	3.7	171	79	3	582	25	27	23	22	2.00
379898--380203	149	2.0	150	85	0	416	20	27	25	26	1.99
380836--381144	162	1.9	161	79	4	345	22	28	25	22	1.99
381177--381544	90	4.1	88	73	10	244	22	24	28	24	1.99
381380--381544	90	1.8	90	88	0	249	21	25	30	23	1.99
381389--381567	90	2.0	90	85	0	241	20	24	31	24	1.98
389812--390251	171	2.6	170	80	2	479	24	25	25	24	2.00
390635--390830	45	4.4	45	72	5	162	21	29	26	22	1.99
390626--390828	90	2.3	90	78	1	210	21	29	26	23	1.99
410197--410570	158	2.4	158	79	6	375	23	24	28	23	2.00
410690--411067	197	1.9	197	80	1	443	26	26	24	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412269--412382	45	2.5	44	78	5	120	17	31	30	20	1.95
412594--412793	90	2.2	90	83	5	244	23	25	26	24	2.00
412761--413105	90	3.8	90	79	2	307	20	27	28	23	1.99
412459--412898	135	3.3	134	75	1	380	23	27	26	22	1.99
412826--412956	44	3.0	44	74	8	122	22	23	29	24	1.99
412551--413061	45	11.4	45	71	8	164	22	26	27	23	2.00
413035--413152	45	2.6	44	75	9	112	20	33	24	22	1.97
413307--413624	45	7.1	45	69	5	140	23	25	26	23	2.00
413369--413537	90	1.9	91	80	8	202	20	28	27	23	1.99
413195--413694	225	2.2	225	87	0	705	21	26	28	24	1.99
425066--425188	45	2.7	44	71	9	104	21	26	27	24	1.99
434248--434320	24	3.0	23	84	7	83	26	28	27	17	1.98
434259--434322	24	2.7	24	87	0	92	28	29	25	17	1.97
435707--436162	171	2.7	171	79	5	449	23	25	28	22	1.99
437746--437843	42	2.3	42	85	0	133	12	25	36	25	1.91
437746--437857	42	2.7	41	84	2	125	14	26	33	25	1.94
437876--438022	45	3.3	45	81	3	143	15	26	34	23	1.95
437669--438018	90	4.0	90	70	8	277	18	26	31	24	1.97
437924--438128	113	1.8	113	79	2	241	20	28	28	22	1.98
438097--438334	90	2.6	90	77	1	226	21	32	26	19	1.97
438172--438308	45	3.0	45	72	4	132	18	29	32	20	1.96
439433--439509	27	2.9	27	80	3	75	12	28	15	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
472168--472223	22	2.5	22	88	0	76	25	16	33	25	1.95
496466--498133	181	9.3	178	75	10	891	41	9	8	40	1.69
496462--498114	356	4.6	354	75	9	1278	41	9	8	40	1.69
498074--498206	67	2.0	67	85	1	178	36	11	9	42	1.72
498141--498808	177	3.7	175	75	10	574	41	9	7	41	1.65
500177--500456	143	2.0	143	84	1	373	40	8	8	42	1.67
500858--500890	17	2.0	17	88	5	50	48	0	12	39	1.40
500578--501971	182	7.7	180	77	7	1134	40	8	9	41	1.68
500311--501971	364	4.6	354	76	8	1223	40	8	9	40	1.68
503479--504787	178	7.3	177	77	5	1038	38	7	10	42	1.69
503638--504642	537	1.9	531	81	6	1233	39	7	10	42	1.67
504530--505092	305	1.8	305	81	6	692	37	8	9	43	1.68
504836--506339	178	8.4	181	76	6	1004	40	8	9	41	1.68
506213--506461	133	1.9	133	88	1	374	39	8	8	43	1.66
506416--508226	181	10.2	181	71	13	585	39	8	9	41	1.68
505755--506995	669	1.9	663	83	5	1633	41	7	9	42	1.65
506400--510013	529	6.8	522	72	12	1334	40	8	9	41	1.67
508123--508404	144	1.9	147	81	10	346	36	6	10	46	1.64
508263--510297	181	11.3	180	78	5	1756	41	8	8	41	1.66
508263--511104	362	8.0	361	76	8	1982	41	8	9	41	1.67
511140--511531	181	2.2	177	81	8	433	41	7	8	42	1.64
511643--514050	181	13.2	179	72	10	1343	40	8	10	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
513074--514050	542	1.8	538	83	4	1306	40	8	9	41	1.68
515818--516187	171	2.2	171	83	1	436	23	24	27	24	2.00
516160--516212	26	2.1	25	92	3	88	26	15	28	30	1.96
517619--517728	45	2.4	45	80	3	123	25	31	22	20	1.98
517873--518022	45	3.3	44	78	6	140	24	29	25	20	1.99
518061--518295	45	5.2	44	71	9	152	20	25	31	22	1.98
531569--531683	45	2.6	45	81	0	140	22	29	33	14	1.94
531630--531764	68	2.0	68	86	0	189	24	32	25	17	1.96
531733--531876	45	3.2	45	75	0	162	24	29	25	20	1.99
531710--531879	90	1.9	90	91	0	277	25	31	23	20	1.98

Tables:   1   2   3