genome.fa.s235.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168060.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_31, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  845463

Tables:   1   2   3   

This is table  3  of  3  ( 346 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
532211--532551	162	2.1	161	80	5	368	24	24	27	24	2.00
533837--533890	26	2.1	26	96	0	99	27	24	18	29	1.98
535739--536328	158	3.7	157	73	8	384	25	26	27	20	1.99
536047--536758	171	4.2	170	81	3	723	24	27	25	21	2.00
536047--536758	342	2.1	341	81	3	824	24	27	25	21	2.00
537694--537987	158	1.9	158	79	1	338	24	23	28	24	2.00
537854--538244	197	2.0	198	80	5	443	26	24	25	24	2.00
538407--538727	150	2.1	149	83	4	405	22	29	21	26	1.99
548591--548635	18	2.5	19	79	17	51	33	17	20	28	1.95
562846--563214	171	2.2	171	81	3	420	24	26	26	22	2.00
563193--563246	26	2.1	26	92	0	90	25	16	27	29	1.97
564453--564556	45	2.3	45	76	3	102	21	30	25	23	1.99
564802--564904	45	2.3	45	87	0	143	23	29	26	21	1.99
564888--565020	45	3.0	45	69	0	113	19	26	29	24	1.99
564841--565020	90	2.0	90	85	0	243	20	26	29	23	1.99
564852--565041	90	2.1	90	83	1	238	21	26	27	24	1.99
565179--565277	45	2.2	45	83	0	117	20	29	28	22	1.98
565197--565322	45	2.8	45	81	0	126	17	29	28	24	1.97
565219--565388	90	1.9	90	82	2	216	21	26	27	25	1.99
565451--565559	45	2.4	45	84	3	139	14	32	31	22	1.94
571491--571561	27	2.6	28	82	4	83	12	30	16	39	1.86
571502--571565	27	2.4	27	84	5	85	12	31	17	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
611700--611751	22	2.4	22	86	0	68	28	15	30	25	1.96
627846--627950	45	2.3	45	77	6	113	21	20	34	22	1.97
631173--632299	178	6.3	180	77	7	922	40	10	8	40	1.70
631173--632299	355	3.2	345	79	7	1002	40	10	8	40	1.70
638821--638857	18	2.1	18	89	0	56	59	5	5	29	1.42
642122--642217	22	4.4	22	82	5	95	22	16	34	26	1.95
652834--652873	20	2.0	20	100	0	80	35	5	30	30	1.79
658410--658507	45	2.2	45	80	12	112	23	18	32	25	1.97
658703--658754	23	2.3	23	86	0	68	28	32	13	25	1.93
672697--674255	181	8.7	178	75	9	1168	42	9	8	40	1.67
672993--674275	535	2.4	537	81	6	1509	42	9	7	39	1.67
674514--674546	18	1.9	17	88	11	50	39	12	6	42	1.67
675529--683379	181	43.5	180	71	12	3283	40	8	9	41	1.68
675529--683331	361	21.6	357	69	13	2721	40	8	9	41	1.68
676683--676999	166	1.9	168	83	3	408	39	8	11	40	1.72
676860--678127	182	7.0	178	77	7	888	41	8	9	41	1.68
676509--677179	347	1.9	348	81	3	809	40	8	9	41	1.69
677055--678110	546	2.0	544	80	4	1199	42	7	9	40	1.66
678049--678205	79	2.0	78	82	1	188	33	8	10	48	1.67
678549--678861	173	1.8	173	81	4	389	40	7	9	41	1.67
679112--679154	20	2.2	19	84	16	52	51	9	11	27	1.69
678354--683331	361	14.0	359	75	9	3061	40	8	9	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
681156--681189	16	2.1	16	89	10	52	38	8	11	41	1.73
683274--683491	116	1.9	115	82	2	258	38	8	12	40	1.74
683393--685769	180	13.3	181	77	8	1912	40	8	10	40	1.70
683407--685779	354	6.6	352	75	10	1657	40	8	10	40	1.70
686812--687494	180	3.8	172	74	12	562	40	8	9	41	1.67
694439--694579	45	3.1	45	79	0	120	22	26	31	19	1.97
694502--694674	90	1.9	90	80	4	197	24	31	26	17	1.97
694571--694674	45	2.3	45	78	6	113	24	28	25	21	1.99
694529--694723	90	2.2	90	80	0	210	25	27	25	21	1.99
694899--695019	45	2.7	45	79	5	136	23	30	25	19	1.98
696572--696980	158	2.6	158	77	3	405	21	29	23	25	1.99
710062--710188	45	2.8	44	78	4	137	22	20	34	22	1.97
710185--710236	23	2.3	23	86	0	68	25	28	17	28	1.97
712113--712697	171	3.4	169	77	5	545	24	23	25	26	2.00
733633--733735	36	2.9	36	91	0	152	24	30	19	26	1.98
735124--736494	180	7.6	180	75	9	973	40	10	8	39	1.71
741953--742025	36	2.0	37	89	2	112	28	9	30	31	1.89
743789--749514	181	31.8	180	76	7	3903	41	9	8	40	1.68
749903--749950	18	2.8	16	87	9	60	43	8	0	47	1.33
750030--756714	181	36.7	181	71	11	2693	41	9	8	40	1.68
744126--752426	536	15.3	531	72	11	3559	41	9	8	40	1.68
744596--752416	715	10.8	708	70	13	2467	41	9	8	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
752424--756831	362	12.3	362	75	8	3015	41	9	8	40	1.67
752489--756572	723	5.7	718	74	9	2323	41	9	7	40	1.67
752488--756714	542	7.9	539	76	7	2793	41	9	8	40	1.67
763340--763469	45	2.9	45	77	8	131	24	20	27	27	1.99
769878--770091	45	4.8	45	75	4	164	25	21	28	24	1.99
780391--780442	19	2.7	19	93	0	86	15	34	15	34	1.89
786799--786884	45	1.9	45	82	0	109	26	23	26	23	2.00
786813--786898	45	1.9	45	80	4	102	27	24	26	20	1.99
821221--821297	36	2.1	36	95	0	136	23	25	23	27	2.00
822697--824933	181	12.5	181	74	8	1310	41	8	9	41	1.67
822766--825648	362	8.1	362	74	10	1565	40	8	9	41	1.67
822809--825651	539	5.3	538	74	10	1541	40	8	9	41	1.67
824354--825690	181	7.6	180	71	11	782	38	8	10	42	1.70
824786--825189	164	2.4	164	82	4	481	38	7	10	44	1.66
825825--829116	181	18.5	180	75	7	2197	40	7	9	41	1.67
825151--826393	675	1.8	679	79	5	1465	40	8	9	41	1.67
825825--829116	361	9.3	357	75	9	2187	40	7	9	41	1.67
827259--828363	173	6.2	177	73	11	460	40	7	10	42	1.66
828299--828601	165	1.8	167	82	5	400	40	5	10	43	1.63
829143--832513	181	18.9	180	74	9	2208	40	7	9	42	1.66
830116--830429	170	1.9	169	81	4	382	42	6	8	41	1.61
829121--832505	889	3.8	889	75	9	2145	40	7	9	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
831113--831813	361	1.9	362	80	4	799	39	7	10	42	1.68
832529--832867	179	1.9	180	80	3	405	40	10	8	41	1.70
833098--833282	101	1.8	101	83	2	246	47	8	7	37	1.62
833205--835729	361	7.0	359	75	7	1732	40	8	9	41	1.68
833205--835733	181	14.1	179	75	6	1679	40	8	9	41	1.68
836296--836328	18	1.9	17	88	11	50	48	6	6	39	1.53
836071--836513	182	2.4	182	80	3	464	41	8	9	40	1.67
836259--836783	272	1.9	267	82	6	646	41	7	9	41	1.67
837760--837822	5	12.6	5	76	18	60	17	1	0	80	0.78
837728--837904	6	27.2	6	72	20	63	23	2	3	71	1.13
837765--837909	15	9.2	16	70	16	74	24	2	2	71	1.10
837864--837907	3	14.7	3	100	0	88	31	0	0	68	0.90
838851--838902	16	3.5	14	78	19	52	28	0	3	67	1.08
838924--839003	6	13.5	6	72	17	69	15	3	2	78	0.99
838924--839003	17	4.9	16	76	14	74	15	3	2	78	0.99
839018--839533	59	8.5	60	76	12	452	44	7	12	35	1.70
839109--839509	123	3.3	123	90	8	607	44	7	11	35	1.70
840897--840926	15	2.0	15	93	0	51	23	26	3	46	1.68

Tables:   1   2   3

The End!