genome.fa.s335.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168160.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_40, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  315255

Tables:   1   2   3   

This is table  3  of  3  ( 269 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
288887--300129	181	62.2	180	72	10	5018	40	8	10	41	1.69
288936--300127	538	20.6	534	73	9	5277	40	8	10	41	1.69
289310--299890	714	14.6	712	72	12	2999	40	8	10	41	1.69
293547--293622	34	2.2	35	92	2	127	42	3	13	40	1.62
293580--300116	357	18.1	347	71	12	1520	40	8	10	41	1.68
294605--295027	216	2.0	213	82	5	521	40	8	10	41	1.69
297053--300121	180	17.0	179	74	10	1689	40	7	9	41	1.67
297827--300129	361	6.4	359	78	7	1942	40	7	9	41	1.66
297827--300115	534	4.3	536	78	6	1653	41	7	9	41	1.66
300186--303094	180	16.2	180	75	7	1750	39	9	9	41	1.70
300205--303120	536	5.4	533	75	8	2089	39	9	10	41	1.70
303171--303632	176	2.6	179	75	4	450	38	8	11	41	1.70
303635--306692	181	17.2	180	75	9	2238	39	8	10	41	1.70
305469--306672	180	6.7	183	74	11	436	38	7	11	42	1.70
305890--306687	172	4.5	172	74	12	525	39	8	11	40	1.72
306221--307144	478	1.9	472	79	6	1026	40	8	11	39	1.72
306751--308479	181	9.7	177	75	7	987	39	8	10	41	1.70
306689--308479	360	5.0	352	74	9	1220	39	8	10	40	1.70
307769--308065	163	1.8	163	81	5	375	39	10	11	38	1.76
308773--309929	177	6.4	177	72	12	691	41	9	8	40	1.67
309777--309809	18	1.9	17	88	11	50	39	6	6	48	1.53
310076--310109	18	2.0	17	88	11	52	38	5	8	47	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311757--311798	19	2.2	20	91	4	68	33	0	9	57	1.31
311756--311804	11	4.6	11	73	17	50	32	0	10	57	1.32
310704--314221	181	19.5	178	72	8	1819	41	9	8	40	1.67
310704--314233	363	9.8	356	73	9	1712	41	9	8	40	1.68
310704--314223	544	6.5	539	74	9	1979	41	9	8	40	1.67
310894--314223	905	3.7	896	75	8	2205	41	9	8	40	1.68
314262--315254	181	5.5	177	71	10	533	41	9	8	39	1.69

Tables:   1   2   3

The End!