genome.fa.s523.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168348.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_57, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144347

Tables:   1   2   3   4   

This is table  4  of  4  ( 476 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114404--114459	3	18.7	3	76	7	51	57	1	1	39	1.20
114427--114457	16	1.9	16	93	0	53	61	0	0	38	0.96
114521--114560	21	1.9	21	84	0	53	62	0	2	35	1.09
114568--114608	19	2.2	19	86	0	55	48	4	0	46	1.23
114980--115008	9	3.3	9	95	4	51	41	0	0	58	0.98
115056--115627	182	3.2	178	82	5	643	43	10	7	38	1.67
115982--116022	14	3.0	14	79	17	50	43	0	0	56	0.99
116039--116067	14	2.0	15	93	6	51	68	3	0	27	1.05
116119--116176	7	8.6	7	70	14	50	48	0	0	51	1.00
116118--116222	20	5.4	19	72	16	81	48	1	0	49	1.12
116439--116533	27	3.4	27	69	12	68	53	0	1	45	1.07
116492--116522	14	2.3	13	94	5	53	48	0	0	51	1.00
116620--116667	17	2.9	16	76	14	53	54	6	0	39	1.26
116700--116736	17	2.2	17	90	0	56	45	0	0	54	1.00
116700--116778	17	4.5	17	67	14	54	48	1	0	50	1.08
116723--116808	25	3.4	25	73	20	65	48	1	1	48	1.16
116937--116977	15	2.9	15	85	7	50	53	0	0	46	1.00
117272--117317	13	3.4	14	79	8	51	50	4	2	43	1.34
117811--117861	14	3.5	14	81	10	50	54	0	1	43	1.11
117810--117861	17	2.9	17	77	11	52	55	0	1	42	1.10
118172--118307	61	2.2	64	75	11	138	48	0	3	47	1.25
118377--118427	25	2.0	25	85	7	68	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118817--118948	40	3.3	40	80	1	147	43	19	14	21	1.87
119293--119346	9	6.1	9	74	18	51	42	1	1	53	1.22
120044--120079	13	2.8	12	88	12	54	41	5	2	50	1.40
120506--120599	48	2.0	46	84	12	120	46	2	0	51	1.13
120588--120649	25	2.5	25	79	10	65	48	0	4	46	1.23
120615--120682	22	3.2	21	80	15	61	42	0	1	55	1.08
120641--120703	29	2.2	27	81	10	72	47	0	1	50	1.10
120964--120997	18	1.9	17	88	5	50	55	0	0	44	0.99
121011--121058	24	2.0	25	83	4	62	47	0	2	50	1.12
121689--121788	40	2.5	39	76	10	96	46	3	1	50	1.23
121806--121844	20	2.0	20	89	0	60	48	2	7	41	1.45
121912--122673	183	4.2	180	78	7	694	40	7	9	41	1.67
122396--122450	24	2.3	25	75	12	62	38	1	3	56	1.28
123653--123708	24	2.3	23	82	8	67	46	1	1	50	1.22
123774--124247	181	2.6	179	77	3	466	39	7	10	42	1.68
124335--124424	23	4.0	22	74	18	78	52	2	0	45	1.13
124409--124449	19	2.2	19	91	4	66	43	0	2	53	1.13
125002--125051	25	2.0	26	84	11	68	36	6	2	56	1.36
125087--125126	19	2.2	18	86	13	55	55	0	0	45	0.99
125060--125160	46	2.1	45	80	14	105	49	1	1	46	1.24
125235--125565	175	1.9	175	83	5	432	41	10	10	37	1.74
125224--125922	183	3.9	180	76	7	460	41	10	9	38	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126290--126338	16	3.0	16	82	11	64	53	2	0	44	1.12
126353--126385	13	2.4	14	85	10	50	45	3	3	48	1.33
126546--126600	19	3.1	18	73	19	53	47	3	0	49	1.19
126885--126953	28	2.4	29	77	13	72	43	5	2	47	1.42
128027--128095	21	3.3	21	75	18	65	43	1	1	53	1.18
128079--128127	22	2.3	21	83	13	57	48	0	4	46	1.20
128104--128153	27	1.9	25	88	8	73	52	0	0	48	1.00
128103--128166	20	3.0	21	81	16	71	54	0	1	43	1.09
128212--128283	14	5.2	14	74	14	51	54	1	2	41	1.23
128259--128314	17	3.2	18	78	19	64	46	1	0	51	1.11
128259--128314	18	3.2	17	80	19	62	46	1	0	51	1.11
130174--130219	23	1.9	23	82	8	56	47	4	0	47	1.21
130157--130251	34	2.8	34	75	13	90	50	2	1	46	1.20
130482--130536	16	3.7	15	77	15	51	41	0	0	58	0.98
130719--130763	22	2.0	22	86	0	63	48	4	2	44	1.35
130946--131013	30	2.3	28	74	18	66	45	1	7	45	1.40
131068--131119	15	3.6	14	76	19	54	46	1	0	51	1.12
131329--131368	21	1.9	21	85	10	55	55	2	2	40	1.27
131559--131657	19	4.9	19	69	23	62	48	2	3	46	1.29
131623--131660	20	1.9	20	88	0	58	50	0	0	50	1.00
131623--131711	29	3.0	28	75	11	79	48	1	3	47	1.26
132560--132685	29	4.5	27	73	24	86	49	0	0	50	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132729--132760	15	2.1	15	94	0	55	46	3	0	50	1.17
132838--132882	20	2.2	20	84	11	56	57	0	2	40	1.11
132832--132898	28	2.4	28	74	18	68	55	0	1	43	1.09
133011--133052	22	2.0	21	85	4	57	50	0	2	47	1.14
133264--133317	28	1.9	28	85	7	74	46	1	1	50	1.23
133503--133545	21	2.0	21	82	8	52	51	4	0	44	1.22
133463--133529	32	2.1	30	81	8	71	49	2	2	44	1.32
133754--133787	15	2.5	13	86	13	50	47	5	0	47	1.26
133844--133913	20	3.5	19	79	12	70	44	2	0	52	1.15
134139--134197	23	2.6	22	72	17	57	45	3	1	49	1.28
134270--134363	8	11.2	8	73	23	63	52	1	1	45	1.15
134256--134359	16	6.2	16	75	18	88	50	0	1	46	1.18
134397--134459	30	2.1	30	82	5	74	46	3	0	50	1.17
134417--134469	21	2.5	21	77	17	56	43	0	0	56	0.99
134645--134708	20	3.3	19	76	20	60	50	4	1	43	1.32
134785--134858	26	2.7	27	76	12	71	43	5	1	50	1.33
135243--135281	10	3.7	10	83	10	51	53	0	0	46	1.00
136227--136266	19	2.0	20	95	4	73	52	0	5	42	1.23
136234--136336	19	5.4	19	70	15	70	45	0	1	51	1.19
136260--136334	11	6.6	11	68	17	55	41	1	1	56	1.16
136304--136347	11	4.2	10	85	8	52	45	0	0	54	0.99
137861--137927	17	4.1	17	67	20	52	50	0	1	47	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137904--137931	11	2.5	11	100	0	56	46	0	0	53	1.00
137769--137996	82	2.8	80	72	18	189	50	1	2	45	1.22
138321--138348	11	2.5	11	100	0	56	53	0	0	46	1.00
138422--138497	15	4.7	15	71	19	64	42	1	1	55	1.16
138424--138519	49	1.9	49	81	10	115	44	1	4	50	1.28
139119--139161	18	2.4	19	81	14	56	55	2	0	41	1.12
139854--139893	11	3.8	10	87	9	53	55	0	0	45	0.99
139933--139972	19	2.0	20	95	4	73	42	5	0	52	1.23
140140--140190	23	2.2	23	79	6	59	47	0	3	49	1.20
141163--141211	23	2.2	23	79	13	59	51	2	2	44	1.24
141492--141546	21	2.8	19	77	20	60	45	1	5	47	1.36
141720--141774	14	3.9	14	78	19	51	54	0	0	45	0.99
141820--141888	17	4.2	16	72	23	63	46	0	1	52	1.09
141820--141888	8	8.4	8	75	23	63	46	0	1	52	1.09
141875--141929	16	3.4	17	78	16	62	49	3	0	47	1.19
141840--141931	33	2.8	32	76	16	82	45	2	1	51	1.20
142256--142349	19	4.6	19	70	23	66	50	1	3	45	1.24
142269--142350	24	3.7	23	78	18	70	50	1	3	45	1.27
143051--143132	19	4.2	20	67	22	50	47	3	0	48	1.19
143115--143156	22	2.0	21	85	4	57	47	2	0	50	1.14
143146--143195	19	2.6	19	78	9	57	42	2	4	52	1.31
143325--143362	16	2.4	16	86	4	51	47	2	2	47	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143404--143434	15	2.1	15	93	0	53	51	0	3	45	1.17
143425--143537	49	2.4	43	81	12	118	47	4	0	46	1.28
143473--143575	27	3.8	27	71	15	72	48	1	0	49	1.12
143779--143840	28	2.2	28	80	2	72	41	0	3	54	1.16
143789--143842	23	2.3	23	90	0	81	44	0	1	53	1.11
144207--144258	24	2.2	24	82	6	61	59	3	0	36	1.16

Tables:   1   2   3   4

The End!