genome.fa.s523.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168348.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_57, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144347

Tables:   1   2   3   4   

This is table  2  of  4  ( 476 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37718--37760	22	2.0	22	85	0	59	51	4	0	44	1.22
38154--38229	22	3.5	20	76	16	73	44	3	0	51	1.20
38465--38524	13	4.5	13	78	15	59	48	1	1	48	1.21
38482--38511	15	1.9	16	93	6	53	46	3	3	46	1.35
38595--38654	18	3.4	18	86	8	81	50	0	3	46	1.18
39099--39147	20	2.5	20	86	0	62	44	2	0	53	1.12
39558--39596	10	3.7	10	83	10	51	53	0	0	46	1.00
40621--40708	11	7.9	11	69	16	56	43	1	1	54	1.15
42279--42320	21	2.0	21	85	4	57	52	2	2	42	1.27
42473--42533	9	7.1	9	72	22	51	50	0	1	47	1.10
42471--42533	14	4.1	16	77	18	64	50	0	1	47	1.10
42539--43716	181	6.6	180	73	11	800	41	7	8	41	1.65
44415--44461	21	2.2	20	85	14	60	42	0	0	57	0.98
45142--45172	16	2.0	16	93	6	55	41	0	0	58	0.98
45281--45415	15	9.2	15	68	23	51	49	1	2	46	1.23
45357--45394	14	2.7	14	84	11	51	55	0	2	42	1.14
45423--45460	16	2.4	17	82	13	53	57	2	0	39	1.12
45588--45696	44	2.5	43	77	11	107	46	3	1	47	1.30
45679--45756	12	7.3	11	70	23	51	41	1	2	55	1.22
45712--45762	22	2.4	22	83	9	61	45	0	3	50	1.20
47014--47084	25	2.7	25	79	12	72	47	1	0	50	1.09
47043--47089	6	7.5	6	77	17	51	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47043--47116	11	6.1	12	77	15	64	52	0	1	45	1.09
47139--47181	10	4.4	10	76	5	52	53	0	2	44	1.13
47494--47829	177	1.9	178	82	6	432	41	11	9	38	1.73
47542--47909	178	2.1	177	81	6	424	42	10	8	39	1.69
47493--48406	497	1.8	494	82	6	1182	41	10	9	39	1.70
48748--48824	21	3.7	22	68	8	54	41	1	1	55	1.16
48801--48858	18	3.5	17	71	23	61	51	1	0	46	1.11
48796--48872	31	2.7	28	80	20	104	53	1	0	45	1.08
49371--49424	18	2.8	20	75	18	60	57	0	3	38	1.17
49515--49563	23	2.2	22	85	3	62	48	6	2	42	1.39
49560--49634	23	3.2	23	72	9	71	36	2	2	58	1.26
49735--49763	14	2.0	15	93	6	51	68	0	0	31	0.89
51254--51370	18	7.5	15	71	22	59	45	0	2	51	1.21
51309--51341	13	2.5	13	85	14	50	42	0	6	51	1.26
51309--51368	25	2.4	25	83	8	68	43	0	3	53	1.17
51336--51370	18	1.9	18	94	0	61	45	0	0	54	0.99
51423--51474	13	4.2	12	77	18	54	53	3	1	40	1.30
51751--51792	7	6.1	7	77	5	50	50	0	0	50	1.00
52450--52504	17	3.1	17	78	5	56	50	1	3	43	1.30
52927--53421	180	2.7	179	81	4	494	40	7	9	42	1.65
53103--53561	181	2.5	179	79	4	465	39	7	9	43	1.64
53985--54739	181	4.2	181	79	6	741	39	7	10	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55429--55492	16	4.0	16	82	11	78	53	0	3	43	1.16
55428--55492	32	2.1	31	88	8	96	52	0	3	44	1.16
56803--56840	20	2.0	20	89	5	60	36	7	0	55	1.29
56916--57336	180	2.3	181	86	3	562	43	9	9	38	1.68
57393--57444	26	2.0	27	85	11	72	44	1	5	48	1.38
57634--58228	181	3.3	175	75	6	496	43	9	8	39	1.67
58324--58396	9	8.7	9	68	23	52	43	1	1	53	1.17
59170--59556	180	2.1	181	82	3	467	38	9	9	42	1.71
59699--59745	23	2.0	23	83	0	58	51	0	0	48	1.00
59912--59960	20	2.4	22	80	13	59	46	8	0	44	1.33
60194--60233	19	2.2	18	86	13	55	55	0	0	45	0.99
60167--60267	50	2.1	45	80	14	105	49	2	1	45	1.28
60368--60408	14	2.8	15	88	3	57	63	0	0	36	0.95
60370--60408	15	2.7	14	88	4	51	64	0	0	35	0.94
62155--62231	20	3.8	21	78	10	65	49	0	0	50	1.00
62570--62615	20	2.2	21	84	3	58	30	8	8	52	1.62
62577--62615	20	1.9	20	89	5	60	28	5	10	56	1.54
63094--63238	31	4.8	30	68	24	85	48	0	0	49	1.10
63155--63198	17	2.6	17	89	3	63	54	0	0	45	0.99
63157--63356	52	3.7	53	67	17	119	50	1	2	46	1.19
63157--63238	17	5.4	16	73	15	52	51	0	0	48	1.00
63319--63362	19	2.4	19	88	3	63	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63159--63365	23	8.9	23	66	27	66	50	0	1	46	1.19
63438--63471	15	2.3	15	89	0	50	55	0	5	38	1.24
63484--63546	12	5.3	12	79	9	67	57	1	0	41	1.08
63480--63543	15	4.2	15	74	14	60	54	1	0	43	1.09
63496--63546	18	3.1	17	75	16	61	56	1	0	41	1.10
64130--64412	144	2.0	146	83	4	367	40	9	8	41	1.68
64666--64722	23	2.5	24	81	16	68	52	1	0	45	1.11
64787--64838	14	3.4	14	78	17	50	57	0	0	42	0.98
65664--65720	10	5.9	10	76	15	57	49	0	1	49	1.11
65664--65720	20	3.0	20	79	7	64	49	0	1	49	1.11
66180--66219	21	2.0	19	90	9	62	52	2	5	40	1.37
66817--66857	17	2.2	20	80	20	54	53	0	4	41	1.22
67084--67138	26	2.2	24	81	15	58	49	3	1	45	1.30
67094--67155	26	2.3	27	84	15	76	48	1	0	50	1.10
67593--67669	27	3.1	25	77	17	72	48	0	1	50	1.09
67600--67669	23	3.0	23	82	14	65	48	0	1	50	1.09
67611--67651	17	2.4	17	80	19	50	48	0	2	48	1.14
67827--67877	17	2.9	17	80	11	50	47	1	0	50	1.12
67884--68326	180	2.5	179	81	5	482	40	8	9	41	1.69
68438--68501	16	3.4	20	75	16	57	50	1	1	46	1.20
68478--68541	32	2.0	31	82	11	76	45	1	0	53	1.10
68495--68535	19	2.1	20	86	4	57	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68643--68680	13	3.0	13	85	14	53	50	2	0	47	1.15
68687--68719	12	2.9	11	91	8	57	51	0	3	45	1.16
68926--68955	14	2.1	14	93	0	51	60	0	0	40	0.97
68925--68996	25	3.1	23	72	18	60	51	2	0	45	1.15
69126--69167	14	2.9	14	86	10	50	50	4	2	42	1.36
69378--69443	15	4.3	15	75	17	73	56	0	1	42	1.08
69407--69468	24	2.7	22	75	18	63	50	0	1	48	1.10
69313--69457	23	5.9	24	68	22	86	53	2	1	43	1.21
69402--69472	36	1.9	36	86	8	99	52	0	1	46	1.09
69543--69612	27	2.7	26	80	12	81	48	2	0	48	1.16
69755--69832	18	4.6	16	71	20	61	50	2	0	47	1.15
69729--69832	36	3.1	32	76	17	79	48	2	1	47	1.28
69800--69843	18	2.2	20	80	15	56	43	0	0	56	0.99
70943--71023	9	8.1	10	69	19	53	43	0	2	54	1.13
71035--71077	18	2.4	17	80	7	50	44	2	2	51	1.27
71250--71292	15	2.5	17	82	17	54	44	4	0	51	1.22
71622--71646	13	1.9	13	100	0	50	60	0	0	40	0.97
71974--72029	24	2.4	23	80	14	62	51	1	0	46	1.11
72209--72279	26	2.9	25	80	15	78	53	2	0	43	1.15
72282--72323	11	3.8	11	81	6	50	38	0	0	61	0.96
72281--72327	18	2.5	19	90	10	71	40	0	0	59	0.97
72693--72722	11	2.7	11	94	0	51	43	6	3	46	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72839--72864	13	2.0	13	100	0	52	46	0	0	53	1.00
72831--72927	42	2.3	41	76	13	99	47	2	1	49	1.20
73026--73107	28	2.7	30	72	12	80	48	3	0	47	1.19
73015--73104	28	3.2	28	71	15	69	46	4	0	48	1.22
73165--73193	11	2.7	11	94	5	51	55	0	0	44	0.99
73702--73743	16	2.7	15	82	17	50	54	4	7	33	1.49
74423--74468	21	2.1	22	84	4	58	36	2	2	58	1.22
74790--74853	33	2.0	31	82	11	76	54	0	3	42	1.16
75043--76177	181	6.4	177	75	7	657	40	11	8	40	1.71
75094--76177	356	3.0	355	77	8	835	40	11	8	39	1.71

Tables:   1   2   3   4