genome.fa.s523.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168348.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_57, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144347

Tables:   1   2   3   4   

This is table  3  of  4  ( 476 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76185--76262	24	3.3	24	75	12	72	53	0	2	43	1.14
76436--76507	34	2.0	37	84	12	98	47	0	1	51	1.09
77096--77141	22	2.2	20	84	7	56	56	2	0	41	1.11
77231--77277	18	2.6	18	83	9	60	51	0	0	48	1.00
77221--77301	9	8.1	10	71	16	53	44	0	2	53	1.14
77251--77317	18	3.6	20	73	15	63	44	0	2	52	1.16
77891--77915	13	1.9	13	100	0	50	60	0	0	40	0.97
78244--78319	12	6.4	12	70	26	56	52	2	0	44	1.14
78228--78446	20	11.3	20	65	27	68	52	1	0	45	1.15
78301--78439	32	4.3	33	65	23	82	51	1	0	46	1.15
78374--78435	25	2.3	27	76	15	67	50	1	1	46	1.20
78228--78446	17	12.3	18	67	24	78	52	1	0	45	1.15
78457--78502	18	2.6	18	83	16	60	54	0	0	45	0.99
80352--80403	27	1.9	27	84	7	70	46	0	0	53	1.00
80350--80396	23	2.0	23	83	0	58	48	0	0	51	1.00
80518--80547	11	2.7	11	94	0	51	43	6	3	46	1.46
80837--80883	26	2.0	26	84	16	66	48	4	0	46	1.21
81149--81203	23	2.3	23	84	9	67	45	0	1	52	1.11
80897--81371	238	2.0	233	97	2	887	49	2	3	43	1.35
83061--84075	177	5.7	178	75	7	758	41	11	7	39	1.70
84808--84841	16	2.1	16	89	10	52	41	0	0	58	0.98
84851--84897	20	2.3	21	78	10	53	51	0	2	46	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85113--85424	172	1.8	171	81	10	395	36	9	10	43	1.71
84927--86170	182	7.0	179	76	9	1008	40	9	8	40	1.69
86260--87416	359	3.2	361	78	6	992	41	9	8	40	1.68
86201--87340	181	6.3	180	76	6	918	42	9	7	40	1.67
87946--89130	182	6.5	182	78	5	1026	42	9	8	39	1.68
87946--91495	181	20.0	181	71	11	1474	41	9	8	40	1.68
89284--89764	179	2.7	179	82	3	547	38	8	9	43	1.67
89854--89896	20	2.2	20	87	8	61	34	6	4	53	1.49
89640--89938	162	1.8	164	86	2	442	39	7	8	45	1.61
91337--91639	160	1.9	159	83	3	394	40	10	8	40	1.71
92498--92682	101	1.8	101	81	4	230	37	9	8	44	1.67
93201--93244	23	2.0	22	95	4	79	45	0	0	54	0.99
94362--94451	23	3.7	24	75	15	78	47	1	1	50	1.15
94371--94417	15	2.9	16	81	9	60	51	2	0	46	1.13
94371--94435	32	2.0	32	82	5	78	47	1	1	49	1.20
94728--94773	25	1.9	23	83	16	58	56	6	0	36	1.25
94776--94827	24	2.2	24	82	6	61	55	0	0	44	0.99
94791--94921	30	4.3	31	68	20	80	48	0	1	49	1.16
94888--94920	14	2.3	15	89	5	50	51	0	0	48	1.00
95084--95594	180	2.8	176	72	12	453	42	7	8	40	1.65
95808--95853	20	2.3	20	78	10	51	50	2	2	45	1.26
95856--95892	19	2.0	18	89	5	56	37	8	0	54	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95862--95901	18	2.2	19	86	4	55	45	5	0	50	1.23
96003--96078	21	3.7	21	75	18	61	48	2	0	48	1.15
97233--97303	28	2.5	29	77	6	74	46	1	1	50	1.18
97724--97760	10	3.6	10	85	7	56	56	5	0	37	1.22
97956--98086	61	2.1	61	98	1	253	48	4	1	45	1.32
98010--98054	23	2.0	23	81	0	54	48	0	2	48	1.13
98660--98702	20	2.2	19	88	12	61	46	0	0	53	1.00
98945--98983	20	2.0	20	90	10	62	51	2	0	46	1.14
99001--99065	9	7.0	9	77	19	62	53	0	1	44	1.09
99482--99547	28	2.3	26	74	23	62	46	0	0	53	1.00
99673--99706	18	1.9	18	88	5	52	50	2	2	44	1.32
100235--100280	22	2.1	22	87	0	65	39	0	2	58	1.10
101729--101768	20	2.1	18	86	9	53	47	5	0	47	1.24
101984--102021	16	2.4	16	82	4	51	42	2	2	52	1.29
102035--102115	20	3.9	21	77	11	69	46	0	1	51	1.08
102047--102186	26	5.6	26	73	18	93	50	0	1	47	1.15
102106--102166	21	3.0	21	78	17	58	49	1	1	47	1.21
102120--102170	21	2.3	23	83	6	70	52	1	0	45	1.12
102912--102949	20	1.9	20	88	0	58	42	0	2	55	1.14
103414--103448	13	2.8	13	87	12	56	45	0	5	48	1.26
103563--103615	18	2.9	18	75	5	54	50	3	1	43	1.30
103682--103733	19	2.7	19	88	11	72	51	1	0	46	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103723--103778	28	2.0	28	86	13	80	46	0	0	53	1.00
103816--103871	17	3.1	17	73	17	51	51	0	1	46	1.11
103815--103871	13	4.5	13	77	20	50	52	0	1	45	1.11
103828--103883	13	4.4	13	80	19	57	50	0	1	48	1.11
104379--104431	26	2.0	26	82	7	63	41	3	3	50	1.38
104443--104475	15	2.2	15	89	10	50	54	0	0	45	0.99
104467--104514	17	3.1	17	71	20	50	50	0	2	47	1.12
104937--104968	10	3.1	11	82	17	50	43	0	0	56	0.99
105036--105089	17	3.1	17	81	7	56	46	0	1	51	1.11
105030--105108	23	3.2	24	77	15	81	43	2	2	51	1.28
105546--105596	27	1.9	26	88	4	75	49	3	1	45	1.32
105543--105609	27	2.5	26	78	9	71	52	2	1	43	1.25
105697--105721	13	1.9	13	100	0	50	44	0	8	48	1.32
105689--105728	12	3.2	12	86	6	53	40	2	7	50	1.44
105745--105847	27	4.0	26	70	23	76	50	0	0	47	1.14
105757--105825	23	2.8	23	74	20	68	47	0	0	52	1.00
105759--105825	16	4.1	17	71	19	61	49	0	0	50	1.00
105827--105869	20	2.2	20	83	8	52	51	0	2	46	1.13
106689--106748	21	2.8	20	73	11	57	56	6	1	35	1.35
107089--107150	26	2.3	26	83	8	72	53	0	1	45	1.10
107178--107211	17	2.0	17	94	0	59	38	0	2	58	1.13
107225--107305	20	3.9	21	77	11	69	46	0	1	51	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107237--107307	25	2.7	26	81	16	85	46	0	2	50	1.16
107320--107360	21	1.9	22	90	5	66	51	2	0	46	1.14
107574--107617	17	2.6	17	82	7	54	45	0	4	50	1.22
108037--108244	101	2.1	101	100	0	416	41	3	8	46	1.52
108312--108357	21	2.1	22	84	4	58	36	2	2	58	1.22
108345--108399	23	2.3	24	75	3	58	47	3	0	49	1.19
108515--108584	11	6.2	12	72	22	53	50	0	0	50	1.00
108516--108584	14	4.9	14	82	10	79	49	0	0	50	1.00
109986--110027	22	1.9	22	85	9	59	45	0	4	50	1.23
110674--110743	19	3.9	17	76	10	59	51	0	0	48	1.00
110674--110710	17	2.2	17	90	0	56	51	0	0	48	1.00
110821--110876	27	2.1	27	86	6	78	50	0	0	50	1.00
110665--110892	23	10.0	23	65	21	72	50	0	2	46	1.19
110835--110874	19	2.0	20	85	4	55	52	0	0	47	1.00
110898--110931	14	2.4	14	95	0	59	52	0	0	47	1.00
111011--111075	28	2.5	25	79	13	76	52	0	3	44	1.16
111016--111072	28	2.0	28	89	0	87	54	0	1	43	1.10
111016--111089	15	4.9	15	71	15	53	52	0	2	44	1.15
111483--111546	24	2.8	24	83	9	71	45	4	1	48	1.32
111753--111802	20	2.4	22	86	10	77	56	0	0	44	0.99
111762--111797	14	2.8	14	84	16	51	58	0	0	41	0.98
112286--112698	182	2.3	182	78	8	414	40	7	8	43	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112786--112850	29	2.2	29	84	10	80	50	0	4	44	1.22
112790--112825	17	2.1	17	89	0	54	52	0	2	44	1.15
112986--113046	24	2.7	21	74	16	59	49	1	1	47	1.21
113431--113485	21	2.8	19	77	20	60	45	1	5	47	1.36
113519--113592	31	2.3	34	81	11	93	48	2	1	47	1.24
113547--113591	17	2.7	18	83	10	60	44	4	0	51	1.21
113607--113666	17	3.5	17	70	17	52	51	3	0	45	1.17
113659--113702	13	3.5	13	79	17	56	50	2	0	47	1.13
113643--113715	17	4.6	17	74	14	59	50	1	0	47	1.09
114276--114353	9	9.2	8	71	19	52	46	1	1	51	1.17

Tables:   1   2   3   4