genome.fa.s557.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168382.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_60, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143073

Tables:   1   2   3   4   

This is table  1  of  4  ( 434 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98--142	19	2.3	20	84	3	65	44	0	0	55	0.99
198--248	23	2.5	20	78	12	50	52	0	3	43	1.19
293--331	19	2.0	20	90	10	62	35	0	7	56	1.28
331--380	24	2.1	23	82	10	57	42	2	4	52	1.31
363--481	16	6.7	18	66	20	65	48	2	0	47	1.21
361--453	34	2.8	33	71	18	77	47	2	1	49	1.20
546--597	27	1.9	27	88	7	79	55	1	0	42	1.10
589--629	16	2.6	16	81	18	50	46	0	0	53	1.00
892--957	27	2.4	27	78	14	73	51	0	0	48	1.00
1085--1166	12	6.6	12	72	14	60	50	1	1	47	1.16
1087--1186	29	3.3	30	74	16	82	50	1	2	47	1.19
2079--2128	18	2.8	19	76	11	52	46	0	0	54	1.00
2423--2650	6	38.7	6	64	23	67	49	1	0	48	1.15
2470--2524	17	3.2	18	82	10	69	50	0	0	49	1.00
2426--2648	14	17.2	13	65	23	55	49	1	0	47	1.15
2491--2645	27	5.7	27	67	16	63	48	1	1	48	1.20
2727--2814	3	28.7	3	81	4	104	38	0	1	60	1.04
2863--2914	21	2.5	22	75	15	56	48	1	1	48	1.24
2884--2968	35	2.4	34	78	11	89	45	0	1	52	1.08
2830--2967	23	6.8	20	67	24	69	47	1	1	49	1.19
2886--2958	5	14.2	5	73	18	53	45	0	1	53	1.09
2861--2972	18	5.8	20	66	26	55	47	0	0	50	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3125--3164	20	2.0	20	86	13	57	47	5	5	42	1.47
3494--3553	19	3.1	19	80	2	75	61	3	0	35	1.12
3508--3605	35	2.8	36	75	25	102	57	1	1	40	1.12
3582--3626	13	3.4	14	76	14	51	48	0	6	44	1.29
3849--3903	23	2.4	23	85	11	69	45	3	0	50	1.19
4185--4252	27	2.4	27	83	13	77	44	2	2	50	1.32
4324--4359	18	2.0	18	88	0	54	50	0	0	50	1.00
4690--4745	28	1.9	30	82	13	73	51	1	0	46	1.11
4720--4840	38	3.2	37	73	19	108	48	1	1	47	1.21
4725--4858	41	3.2	40	75	17	123	49	1	2	47	1.23
5103--5147	22	2.0	23	86	4	65	60	2	0	37	1.09
5480--5558	18	4.3	18	76	20	76	50	0	1	48	1.08
5504--5665	15	10.9	15	68	22	67	48	0	1	48	1.16
5488--5642	84	1.9	82	80	12	183	49	0	1	49	1.14
5497--5697	8	25.5	8	66	21	52	48	0	1	48	1.16
5472--5697	30	7.9	30	66	25	77	49	0	1	48	1.15
5610--5697	20	4.3	20	77	12	81	47	0	2	50	1.13
5958--6013	28	1.9	29	82	13	71	57	5	1	35	1.32
6363--6425	25	2.4	27	74	17	69	42	3	1	52	1.27
6735--6816	34	2.5	35	80	11	84	45	0	3	51	1.19
7545--7612	25	2.7	25	80	11	77	50	0	0	50	1.00
7568--7615	6	8.0	6	82	17	64	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7559--7619	14	4.2	14	80	19	72	49	0	0	50	1.00
7557--7615	20	3.1	20	76	20	72	49	0	0	50	1.00
7586--7641	14	4.1	13	76	19	51	51	3	0	44	1.18
8239--8286	23	2.1	22	88	3	69	56	2	0	41	1.11
8251--8340	37	2.6	38	80	16	97	51	3	0	45	1.18
8859--8917	24	2.5	24	81	5	68	54	1	3	40	1.27
8859--8944	11	7.5	11	68	11	57	55	2	3	38	1.29
9092--9149	17	3.4	17	83	9	66	51	0	1	46	1.11
9110--9169	26	2.6	23	82	12	61	50	3	1	45	1.28
9565--9661	26	3.6	27	73	19	69	44	5	2	48	1.36
9646--9688	17	2.4	18	77	14	54	51	0	2	46	1.13
9672--9716	23	1.9	24	81	4	56	48	4	2	44	1.35
11093--11143	20	2.5	20	75	12	52	43	1	0	54	1.11
11240--11305	26	2.4	27	75	12	73	48	0	0	51	1.00
11242--11290	21	2.3	22	79	13	57	48	0	0	51	1.00
11710--11744	10	3.7	10	85	14	56	48	0	0	51	1.00
11756--12116	171	2.1	169	79	10	367	40	7	10	40	1.69
12573--12616	17	2.5	18	85	7	63	43	0	4	52	1.22
13590--13683	48	2.0	48	82	0	116	43	3	3	50	1.34
13677--13709	13	2.4	14	90	10	50	51	0	6	42	1.26
14733--14808	40	1.9	40	81	10	93	51	1	5	42	1.33
14773--14860	9	10.2	9	70	25	57	52	1	1	45	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15187--15256	11	5.9	11	72	24	54	45	0	0	54	0.99
15191--15294	16	6.5	16	69	19	58	46	0	0	52	1.07
15189--15293	26	4.2	24	68	21	65	46	0	0	52	1.07
16393--16440	25	2.0	24	87	4	69	41	2	0	56	1.11
17085--17130	14	3.2	14	78	6	56	45	2	2	50	1.26
17388--17455	33	2.1	31	81	10	75	48	1	5	44	1.36
19019--19112	48	2.0	48	82	0	116	43	3	3	50	1.34
20163--20238	40	1.9	40	81	10	93	51	1	5	42	1.33
20203--20291	18	5.1	17	76	15	85	51	1	1	46	1.15
20703--20748	17	2.8	16	76	23	51	50	2	0	47	1.13
20849--20943	41	2.3	43	76	12	99	50	7	1	41	1.37
20898--20960	29	2.0	28	82	17	72	49	6	3	41	1.44
21838--21891	25	2.2	26	80	16	69	40	1	0	57	1.09
21850--21899	25	2.0	25	88	3	75	42	2	0	56	1.11
27638--27681	13	3.5	13	78	12	56	47	2	0	50	1.13
27780--27819	20	2.0	20	85	9	55	52	0	0	47	1.00
27885--27948	18	3.6	17	73	10	56	43	3	7	45	1.48
27926--27982	17	3.5	16	75	17	55	45	0	1	52	1.11
28586--28632	15	3.5	13	78	16	51	55	0	0	44	0.99
28693--28726	14	2.5	13	90	4	50	70	0	0	29	0.87
28693--28735	13	3.2	13	90	3	59	67	0	0	32	0.91
28957--29297	181	1.9	181	82	1	432	41	9	8	40	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28951--29389	181	2.5	177	78	5	427	41	9	8	40	1.68
30337--30370	13	2.5	13	90	4	50	50	2	0	47	1.16
31376--31531	72	2.2	72	87	2	215	26	17	17	38	1.92
31392--31536	72	2.0	71	89	4	220	27	17	15	38	1.91
32548--32598	25	2.0	26	88	3	77	45	1	1	50	1.24
34644--34697	13	4.3	12	83	6	63	59	3	0	37	1.15
34644--34697	25	2.2	25	83	6	65	59	3	0	37	1.15
35495--35553	20	3.0	20	72	20	52	47	1	1	49	1.21
35570--35611	17	2.5	17	88	3	59	52	0	0	47	1.00
35569--35781	17	13.4	16	65	22	58	51	0	1	46	1.16
35622--35781	22	7.1	22	68	22	93	51	1	1	45	1.20
35712--35769	26	2.2	27	79	14	68	55	0	1	43	1.10
35742--35793	16	3.2	16	78	5	59	55	0	1	42	1.10
35847--35902	21	2.7	21	81	13	62	46	5	5	42	1.49
35994--36035	8	5.1	8	81	16	50	47	0	4	47	1.23
35994--36034	17	2.5	17	84	11	50	48	0	4	46	1.23
35972--36035	25	2.4	27	79	7	69	46	0	4	48	1.23
37224--37256	13	2.4	14	90	10	50	51	0	6	42	1.26
37480--38405	181	5.2	177	74	10	515	41	9	8	40	1.67
37669--38336	352	1.9	352	80	6	789	41	8	8	41	1.67
39039--39591	181	3.1	172	77	6	520	42	9	7	40	1.65
40582--40621	20	2.0	20	85	9	55	47	7	0	45	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40636--40691	22	2.7	20	81	8	58	53	1	1	42	1.21
40764--40807	22	2.0	22	81	0	52	52	0	4	43	1.22
41034--41090	15	3.6	16	80	19	59	57	0	3	38	1.16
41033--41115	12	7.1	12	68	20	59	55	0	2	42	1.13
41033--41115	9	9.4	9	70	17	59	55	0	2	42	1.13
41032--41116	38	2.2	39	85	8	113	54	0	2	43	1.13
41066--41123	22	3.1	19	75	20	59	53	0	0	46	1.00
42114--42230	49	2.2	54	76	19	145	41	6	4	47	1.50
42129--42239	49	2.3	50	92	3	181	44	7	3	45	1.49
43362--43413	21	2.7	20	78	18	56	50	3	3	42	1.39

Tables:   1   2   3   4