genome.fa.s557.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168382.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_60, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143073

Tables:   1   2   3   4   

This is table  2  of  4  ( 434 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43538--43579	17	2.4	17	81	14	50	57	0	2	40	1.12
43619--43667	22	2.2	22	78	7	55	48	2	0	48	1.12
43720--43748	14	2.0	15	93	6	51	68	3	0	27	1.05
43983--44416	181	2.4	181	80	3	439	40	10	8	41	1.69
45367--45400	13	2.5	13	90	4	50	50	2	0	47	1.16
47629--47686	11	5.1	11	83	6	53	51	1	0	46	1.11
48603--48639	18	2.1	18	95	5	67	45	0	0	54	1.00
49524--49585	32	1.9	32	83	6	81	41	0	1	56	1.09
49635--49687	12	4.3	12	85	4	70	60	1	0	37	1.08
50572--50620	17	2.8	18	84	9	50	48	0	0	51	1.00
50572--50608	17	2.2	17	90	0	56	51	0	0	48	1.00
50734--50771	10	3.9	10	82	6	51	57	2	0	39	1.12
50985--51034	26	1.9	26	84	8	66	46	0	4	50	1.20
51098--51131	12	2.8	13	91	8	54	47	5	8	38	1.59
51408--51445	19	2.0	20	85	10	53	50	5	15	28	1.66
52706--52771	18	3.5	18	69	17	53	48	0	3	48	1.17
52919--52995	10	8.1	10	67	29	53	48	1	2	48	1.23
53202--53263	25	2.6	23	82	15	72	48	0	1	50	1.10
53218--53262	22	2.0	21	87	12	63	48	0	2	48	1.13
53453--53486	16	2.2	15	89	5	50	61	2	2	32	1.26
53528--53590	12	4.9	13	78	7	58	46	0	3	50	1.17
53479--53661	8	22.1	8	67	22	69	49	0	3	46	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53833--53868	19	1.9	19	88	5	56	38	11	8	41	1.71
53931--54008	26	3.0	25	72	10	68	47	1	3	47	1.28
54805--54839	11	3.1	11	88	8	52	65	0	0	34	0.93
55487--55536	25	2.0	24	84	3	64	40	2	2	56	1.22
55538--55597	21	3.0	20	72	13	59	41	3	1	53	1.27
55573--55605	16	2.1	15	94	5	57	42	0	0	57	0.98
56558--56587	14	2.1	14	93	0	51	53	0	0	46	1.00
56713--56754	22	1.9	22	85	9	59	38	2	2	57	1.25
56965--57022	21	2.8	20	80	12	55	55	0	1	43	1.10
56987--57038	11	4.5	11	76	9	50	57	1	0	40	1.10
57100--57165	34	1.9	34	84	6	89	50	1	1	46	1.20
57114--57195	15	5.9	13	70	25	53	51	2	2	43	1.28
57111--57195	41	2.1	41	85	10	113	50	2	2	44	1.27
57668--57714	21	2.2	21	85	7	60	55	0	0	44	0.99
57687--57732	21	2.2	21	85	14	60	52	0	0	47	1.00
57843--57875	8	4.2	8	84	7	50	54	0	0	45	0.99
57843--57884	23	1.9	22	90	9	68	54	0	0	45	0.99
58111--58166	24	2.3	23	82	11	60	48	1	0	50	1.11
58160--58249	21	4.2	20	69	16	56	47	5	2	44	1.38
58334--58388	13	3.9	14	75	15	51	41	1	3	52	1.29
58459--58513	13	4.2	13	73	17	51	45	0	1	52	1.11
58469--58521	26	2.0	27	81	7	63	47	1	1	49	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58837--58879	19	2.3	19	83	0	50	51	0	0	48	1.00
59132--59176	23	2.0	23	82	8	56	51	2	0	46	1.13
59611--59649	19	2.0	20	85	5	53	53	0	0	46	1.00
59650--59683	9	3.9	9	88	3	52	32	5	0	61	1.20
59642--59702	26	2.3	26	77	5	70	37	4	0	57	1.20
60098--60149	15	3.5	16	85	12	67	40	0	0	59	0.97
61969--62340	182	2.0	182	88	3	543	42	9	8	39	1.67
61995--62403	181	2.3	181	84	3	529	42	10	8	39	1.70
63487--63524	12	2.9	13	84	11	51	57	0	0	42	0.98
64131--64481	180	2.0	180	82	5	433	39	9	10	40	1.71
64592--64623	16	2.0	16	93	0	55	59	0	3	37	1.13
64524--64639	19	5.9	19	67	22	55	50	1	2	44	1.25
64791--64833	11	4.0	11	82	11	54	44	0	2	53	1.13
65189--65232	17	2.5	18	82	14	56	54	2	0	43	1.12
65198--65254	15	3.7	15	76	19	55	50	1	1	45	1.22
65590--65640	20	2.5	20	73	17	52	43	1	1	52	1.23
66223--66257	18	1.9	18	94	0	61	54	0	0	45	0.99
66238--66284	13	3.6	14	78	18	57	51	4	0	44	1.21
66223--66317	18	5.9	15	71	21	52	52	3	1	43	1.24
66305--66400	39	2.6	36	73	19	90	51	2	2	44	1.25
66310--66410	18	5.5	17	70	22	64	51	2	1	43	1.28
66709--66748	19	2.3	17	84	16	55	40	2	0	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66754--66787	16	2.1	16	89	10	52	58	0	0	41	0.98
67856--67930	10	7.6	10	75	20	52	53	0	1	45	1.08
67825--67916	18	5.2	17	71	22	66	56	1	0	42	1.06
67919--67960	20	2.0	22	86	9	61	40	4	0	54	1.21
68218--68293	7	10.9	7	69	10	57	48	1	1	48	1.18
68279--68316	11	3.4	11	88	3	58	39	0	0	60	0.97
68394--68435	18	2.6	16	81	11	50	50	4	0	45	1.23
68543--68593	9	5.8	9	83	4	59	49	0	0	50	1.00
68545--68587	20	2.1	21	86	4	61	48	0	0	51	1.00
69177--69222	22	2.1	23	92	8	78	45	4	0	50	1.21
69215--69253	19	2.0	20	85	14	55	56	2	5	35	1.35
69286--69390	19	5.6	20	69	28	61	48	0	0	49	1.14
69314--69392	18	4.4	18	72	15	56	49	1	0	49	1.09
69810--69834	13	1.9	13	100	0	50	52	0	8	40	1.31
69984--70035	17	3.1	17	78	13	54	44	0	1	53	1.11
70022--70054	17	2.0	17	88	5	50	45	0	0	54	0.99
70035--70123	30	2.9	28	74	24	74	51	0	2	46	1.13
70583--70646	7	9.1	7	74	16	53	40	0	0	59	0.97
70581--70641	17	3.4	17	76	15	61	40	0	0	59	0.98
70575--70660	34	2.5	35	84	7	86	43	1	2	53	1.21
70898--70947	23	2.1	25	85	7	68	46	2	0	52	1.12
71105--71137	17	2.0	17	88	5	50	48	3	12	36	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72014--72092	24	3.2	24	75	18	63	48	3	1	46	1.28
72406--72466	22	2.8	22	72	18	56	44	1	0	54	1.10
72557--72656	49	2.0	49	83	7	123	48	2	3	47	1.28
72959--73291	180	1.8	181	79	5	388	41	8	6	43	1.60
72959--73353	180	2.2	181	78	4	386	41	8	6	43	1.62
73451--73598	20	6.7	22	72	20	89	43	0	2	53	1.15
73442--73508	14	5.1	13	71	10	55	46	0	0	53	1.00
73442--73517	27	2.8	26	79	11	82	46	0	1	52	1.08
73502--73561	16	3.4	17	74	14	50	41	0	5	53	1.23
73455--73604	51	3.0	50	75	17	125	42	0	2	54	1.14
74294--74324	15	2.0	16	93	6	55	45	3	6	45	1.45
74336--74370	16	2.3	15	90	5	52	37	5	2	54	1.39
74877--75046	92	1.8	92	84	2	234	45	9	11	34	1.72
74969--75593	180	3.5	179	81	6	602	42	8	9	39	1.68
75671--75716	19	2.5	19	82	3	58	47	2	0	50	1.13
75865--75914	12	4.2	12	80	12	59	54	0	2	44	1.11
75873--75941	16	4.6	16	72	21	51	53	0	0	46	1.00
75924--75971	22	2.2	22	100	0	96	45	4	0	50	1.21
75913--75976	22	3.0	21	88	6	94	48	3	0	48	1.17
75914--76029	22	5.3	22	72	19	91	47	3	0	49	1.18
75920--76032	20	5.3	20	71	21	79	46	3	0	50	1.18
75964--76040	16	5.0	16	74	15	54	46	3	0	49	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76033--76087	23	2.4	22	79	8	56	50	3	0	45	1.19
75917--76066	45	3.3	45	77	10	130	46	4	0	49	1.20
76052--76090	12	3.5	11	86	10	53	51	0	0	48	1.00
76291--76346	14	3.8	15	77	17	55	46	0	1	51	1.11
76317--76360	18	2.5	18	81	3	54	40	0	0	59	0.98
76354--76415	29	2.0	32	84	9	85	54	0	3	41	1.16
77706--77762	20	2.8	20	78	7	62	49	5	0	45	1.24
77800--77875	33	2.3	33	82	10	86	46	2	1	50	1.24
77824--77900	27	2.9	26	79	9	75	51	2	0	45	1.14
78142--78205	14	4.5	14	77	12	51	46	7	1	43	1.42

Tables:   1   2   3   4