genome.fa.s557.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168382.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_60, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143073

Tables:   1   2   3   4   

This is table  3  of  4  ( 434 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78513--78569	29	2.0	29	86	6	80	45	0	5	49	1.24
78673--78719	16	3.1	17	82	17	59	48	4	0	46	1.21
78705--78835	29	4.5	30	72	21	82	49	1	0	48	1.10
78756--78812	14	4.4	13	76	12	55	54	0	0	45	0.99
78766--78806	18	2.3	18	86	0	55	58	0	0	41	0.98
78970--79011	8	5.1	8	78	16	50	50	2	2	45	1.27
78970--79019	16	3.1	16	82	5	64	48	4	4	44	1.40
79261--79363	22	4.7	22	66	17	61	51	1	1	44	1.23
79259--79312	23	2.3	23	78	15	56	48	1	1	48	1.23
79259--79351	15	6.4	15	66	21	56	51	2	1	45	1.20
79346--79389	19	2.3	19	84	0	52	40	0	2	56	1.11
79376--79425	24	2.1	22	85	14	64	44	4	0	52	1.20
79513--79594	41	2.0	40	81	13	96	37	0	4	57	1.20
79638--79683	15	2.9	16	81	12	51	50	0	0	50	1.00
79666--79716	23	2.2	24	80	16	63	47	1	1	49	1.24
80139--80760	181	3.5	179	73	9	405	43	10	7	38	1.68
80786--80818	17	2.0	16	94	5	57	39	0	0	60	0.97
80790--80824	17	2.1	17	88	0	52	45	2	0	51	1.16
80927--80976	23	2.1	25	85	7	68	46	2	0	52	1.12
80966--81032	26	2.6	27	72	13	68	34	1	5	58	1.32
80967--81034	27	2.4	29	73	11	70	33	1	5	58	1.31
81131--82014	372	2.4	358	78	9	904	40	7	9	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81552--82081	181	2.9	180	80	6	543	39	8	10	42	1.68
82146--82189	14	3.1	14	86	3	61	54	0	0	45	0.99
82145--82216	29	2.6	27	80	8	72	45	1	0	52	1.09
82161--82226	14	4.8	14	76	10	57	46	1	0	51	1.10
82351--82403	16	3.1	18	74	20	60	45	1	1	50	1.23
82696--82757	26	2.3	26	81	8	72	45	0	1	53	1.10
82981--83007	13	2.1	13	100	0	54	37	7	0	55	1.28
83553--83639	41	2.1	41	81	12	99	40	5	2	51	1.38
83618--83659	17	2.4	18	80	7	52	42	2	4	50	1.36
83762--83803	22	1.9	22	85	0	57	42	2	0	54	1.13
83845--83891	19	2.6	19	86	6	62	42	0	6	51	1.27
83850--83903	19	2.8	19	86	5	65	38	1	7	51	1.41
83920--83955	15	2.5	14	86	4	54	44	0	2	52	1.15
84008--84065	26	2.3	26	88	8	84	46	6	1	44	1.40
84008--84065	25	2.3	25	88	8	82	46	6	1	44	1.40
84276--84307	16	1.9	17	93	6	57	50	6	0	43	1.27
84645--84683	19	2.1	19	85	9	53	41	0	0	58	0.98
84644--84703	17	3.4	17	78	15	50	46	0	0	53	1.00
85153--85233	27	2.9	27	78	10	92	49	3	2	44	1.33
86459--86531	32	2.3	34	77	15	84	57	0	0	42	0.98
86491--86537	17	2.7	18	81	15	55	61	0	0	38	0.96
87591--87645	14	3.9	14	73	17	51	41	3	0	54	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87584--87712	15	7.9	16	68	25	60	44	2	2	50	1.27
88128--88564	181	2.4	178	80	4	513	42	9	8	39	1.68
91188--91758	182	3.2	179	80	7	620	40	7	9	43	1.64
91813--91841	9	3.3	9	95	4	51	58	0	0	41	0.98
91818--91869	14	3.8	13	76	14	52	53	1	3	40	1.30
92222--92262	19	2.2	19	86	0	55	46	0	4	48	1.23
92350--92389	19	2.1	19	86	9	55	52	0	0	47	1.00
92415--92477	16	3.9	16	72	27	53	42	4	1	50	1.32
92481--92515	18	1.9	18	88	0	52	51	2	0	45	1.16
92726--92755	4	7.2	4	92	7	51	46	3	0	50	1.18
93901--93945	14	2.9	15	80	12	56	51	0	2	46	1.13
93924--93989	35	1.9	35	82	11	84	43	3	3	50	1.33
93986--94020	16	2.1	18	89	10	56	48	5	0	45	1.26
94355--94380	13	2.0	13	100	0	52	46	0	0	53	1.00
94350--94408	8	7.8	8	73	17	54	50	0	0	49	1.00
94381--94458	27	3.0	27	83	10	83	55	1	1	42	1.16
94766--94835	25	2.7	25	84	10	79	47	2	2	47	1.32
94859--94897	20	2.0	20	85	10	53	35	0	5	58	1.20
95552--95592	16	2.6	16	78	17	50	51	2	0	46	1.14
95982--96027	24	1.9	24	82	8	58	34	2	0	63	1.07
96055--96122	34	1.9	36	85	11	97	44	1	1	52	1.19
96254--96324	19	3.5	19	69	14	52	52	0	4	43	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96698--96769	22	3.3	20	78	14	65	47	2	2	47	1.31
96703--96768	34	1.9	34	84	6	89	48	3	3	45	1.33
97703--97814	54	2.1	53	86	3	154	28	11	9	50	1.71
97719--97838	54	2.3	54	87	5	167	26	13	8	51	1.69
97829--97861	15	2.3	15	94	5	59	0	12	0	87	0.53
98027--98065	17	2.3	16	83	12	51	25	0	0	74	0.82
98517--98560	19	2.3	19	88	0	61	50	25	9	15	1.74
99004--99099	43	2.2	42	82	12	106	44	19	13	21	1.85
99436--99791	25	15.4	24	79	12	322	33	14	11	39	1.83
99429--99626	67	3.0	68	88	4	287	35	16	11	36	1.84
99611--99812	71	2.8	71	93	0	341	33	13	11	42	1.80
99429--99819	46	8.5	46	79	11	319	34	14	11	39	1.82
100971--101007	13	2.8	14	84	16	51	32	2	0	64	1.07
101164--101207	15	2.8	16	79	6	54	54	0	0	45	0.99
101225--101257	9	3.5	10	92	8	52	42	0	0	57	0.98
101440--101478	19	2.1	18	90	4	60	35	2	5	56	1.35
101564--101608	15	3.1	15	81	15	58	46	0	0	53	1.00
101564--101680	27	4.1	27	69	22	71	47	0	2	49	1.15
101682--101722	19	2.3	17	83	8	55	48	4	0	46	1.23
101721--101778	10	5.0	12	75	19	52	48	1	1	48	1.22
101809--101859	17	2.9	18	78	21	63	50	0	3	45	1.20
103352--103399	20	2.6	17	81	18	53	60	4	2	33	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103410--103453	23	1.9	23	90	0	70	68	2	0	29	1.02
103417--103461	20	2.2	20	80	7	56	64	0	2	33	1.06
104957--105286	180	1.8	181	81	5	418	41	8	10	39	1.70
105388--105453	21	2.9	24	74	19	68	50	3	0	46	1.16
105452--105831	181	2.1	182	81	2	451	41	8	9	40	1.68
105737--105970	120	1.9	120	81	4	274	47	8	10	33	1.68
105857--106400	182	3.0	181	77	8	494	41	8	10	38	1.71
106736--106801	29	2.3	29	80	15	75	59	1	1	37	1.16
107262--107322	29	2.0	30	87	6	88	47	3	0	49	1.18
107306--107354	13	3.6	14	77	17	50	48	0	2	48	1.12
107461--107486	13	2.0	13	100	0	52	46	0	0	53	1.00
107571--107634	20	3.3	19	76	20	60	50	4	1	43	1.32
107728--107797	20	3.7	20	75	11	65	45	2	1	50	1.25
107757--107792	17	2.1	17	89	0	54	44	2	0	52	1.15
108023--108076	19	3.0	19	79	15	62	37	3	0	59	1.15
108238--108302	12	5.7	11	73	20	53	46	1	0	52	1.10
108232--108303	24	3.0	24	76	13	60	47	1	0	51	1.09
108235--108332	46	2.2	46	85	9	130	50	2	0	47	1.12
108649--108680	17	1.9	16	93	6	55	62	3	0	34	1.11
109217--109280	21	3.4	18	72	16	58	46	1	1	50	1.20
109443--109499	23	2.5	24	81	13	59	50	0	1	47	1.11
109441--109499	30	1.9	31	83	10	77	49	0	1	49	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109539--109588	19	2.7	19	78	12	50	54	0	0	46	1.00
109561--109646	14	5.1	19	68	29	54	51	2	0	46	1.13
109887--109932	15	3.1	15	82	11	51	50	2	0	47	1.13
109902--109954	21	2.5	22	75	19	60	47	7	0	45	1.31
110017--110158	29	4.6	30	69	19	80	46	1	2	49	1.25
110267--110319	13	3.9	13	80	5	52	39	0	1	58	1.09
110272--110311	21	1.9	21	84	0	53	37	0	0	62	0.95
110257--110321	30	2.2	30	86	5	87	40	0	1	58	1.07
110551--110623	34	2.2	34	83	11	89	47	0	4	47	1.21
111379--111431	15	3.5	15	75	19	56	49	0	0	50	1.00

Tables:   1   2   3   4