genome.fa.s557.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168382.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_60, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143073

Tables:   1   2   3   4   

This is table  4  of  4  ( 434 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111381--111431	13	3.3	15	76	20	52	49	0	0	50	1.00
111376--111455	32	2.5	33	81	10	101	45	3	1	50	1.28
111383--111455	31	2.2	32	85	7	94	47	2	1	47	1.24
111572--111644	19	3.7	19	68	18	51	46	4	1	47	1.30
112246--112315	26	2.9	25	86	14	94	52	0	1	45	1.09
112948--112997	20	2.5	20	83	0	55	48	0	2	50	1.12
112959--113010	15	3.5	15	76	2	52	46	0	0	53	1.00
113004--113053	14	3.6	14	76	15	50	50	0	0	50	1.00
112958--113059	19	5.7	19	68	23	62	48	0	0	51	1.00
113215--113270	17	3.4	16	76	16	53	46	0	1	51	1.11
113185--113270	31	2.8	32	72	13	83	46	0	3	50	1.18
113216--113263	23	2.1	23	84	7	62	45	0	2	52	1.12
113213--113275	25	2.7	23	80	16	67	46	0	1	52	1.10
114018--114056	19	2.0	20	85	5	53	53	0	0	46	1.00
114732--114787	19	3.1	18	79	20	64	51	1	0	46	1.11
114736--114783	19	2.5	20	83	16	66	54	2	0	43	1.12
114778--114821	19	2.3	19	80	7	54	54	4	0	40	1.21
115335--115379	18	2.5	18	82	7	56	53	2	2	42	1.25
115954--116003	9	5.7	9	76	4	57	48	2	2	48	1.24
116493--116535	15	2.8	16	86	6	54	44	0	0	55	0.99
116504--116572	22	3.1	22	77	8	77	47	0	0	52	1.00
116491--116552	13	4.5	13	77	16	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116493--116570	26	2.9	27	73	17	74	47	0	0	52	1.00
116517--116607	36	2.5	36	81	12	98	48	0	2	49	1.13
116513--116601	35	2.6	34	79	10	94	48	0	2	49	1.13
116908--116944	19	1.9	19	89	10	58	64	0	0	35	0.94
117005--117038	16	2.1	16	94	0	59	47	0	0	52	1.00
117311--117655	180	1.9	179	79	4	390	43	11	5	39	1.64
118539--120757	535	4.1	534	77	7	1963	40	10	8	40	1.69
118507--120759	181	12.6	180	75	8	1420	40	10	8	40	1.69
121594--121673	39	2.1	39	81	13	94	48	3	6	41	1.46
121911--122422	181	2.9	176	76	5	483	43	8	8	40	1.63
122603--122676	36	2.1	36	92	0	121	40	4	5	50	1.44
123333--123377	23	2.0	23	86	4	65	40	2	0	57	1.11
122644--124031	181	7.7	180	77	7	1130	40	8	10	41	1.69
123938--124170	120	1.9	120	80	3	272	46	10	11	32	1.73
124300--124332	18	1.9	17	88	11	50	42	3	12	42	1.57
124058--124698	181	3.5	180	80	4	673	42	9	10	37	1.73
124662--124694	18	1.9	17	88	11	50	48	6	6	39	1.53
124657--124703	19	2.7	18	80	12	62	44	4	10	40	1.59
124720--127283	181	14.3	180	76	7	1914	41	9	7	40	1.67
126654--126686	18	1.9	17	88	11	50	39	6	6	48	1.53
127190--127222	18	1.9	17	88	11	50	39	6	6	48	1.53
127818--127858	16	2.4	18	84	12	59	60	2	0	36	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128419--128869	178	2.5	180	74	8	398	41	7	9	40	1.68
128918--129508	182	3.3	178	77	9	571	40	7	9	43	1.64
129507--129550	14	3.1	14	81	12	54	54	0	0	45	0.99
129507--129564	28	2.0	29	83	9	75	48	0	0	51	1.00
129772--129823	20	2.7	20	96	3	97	55	5	0	38	1.24
130395--130524	65	2.0	67	86	8	187	36	16	5	41	1.71
132546--132601	18	3.2	18	72	12	53	37	8	7	46	1.63
132051--133789	181	9.6	179	71	11	810	43	9	7	39	1.65
132992--133789	180	4.5	179	76	6	624	44	9	6	39	1.64
133817--133880	32	1.9	32	87	9	92	56	1	3	39	1.25
133965--134028	24	2.8	24	84	13	73	46	1	0	51	1.10
135825--135872	26	1.9	26	83	8	64	20	16	6	56	1.62
135509--136055	279	2.0	280	93	1	938	28	15	10	44	1.80
136155--136198	22	2.0	22	86	0	61	43	9	11	36	1.72
136562--136626	31	2.1	31	85	5	87	52	4	0	43	1.22
137056--137109	22	2.5	21	82	8	63	48	0	1	50	1.11
137113--137187	39	1.9	39	83	5	98	45	6	0	48	1.29
137994--138033	10	3.9	11	87	12	50	52	2	0	45	1.14
138001--138043	14	3.1	14	83	10	52	55	0	0	44	0.99
138020--138052	17	1.9	17	88	11	50	60	0	0	39	0.97
139086--139144	26	2.3	26	81	18	70	35	0	3	61	1.13
139907--140587	181	3.8	180	77	3	619	41	8	7	42	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140760--141397	182	3.6	178	76	10	540	42	9	8	39	1.67
140890--141338	177	2.5	176	77	9	448	41	9	8	40	1.67
141422--141485	30	2.1	30	83	16	80	53	0	1	45	1.10
141443--141482	17	2.4	17	86	0	62	52	0	0	47	1.00
141580--141634	22	2.4	24	85	11	71	49	5	1	43	1.36
141826--142855	180	5.8	177	73	10	712	40	8	9	41	1.69
142024--142358	166	2.0	166	81	3	397	38	8	11	41	1.72
141843--142496	347	1.9	345	79	4	735	40	8	9	41	1.68

Tables:   1   2   3   4

The End!