genome.fa.s579.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168404.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_62, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  141830

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 501 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36086--36128	15	2.7	15	83	16	52	55	2	4	37	1.33
36352--36419	26	2.7	24	75	9	64	42	10	1	45	1.47
36734--37577	412	2.0	418	90	5	1323	41	6	7	44	1.57
37716--37745	15	1.9	16	93	6	53	43	3	6	46	1.46
37839--37899	23	2.7	23	76	19	72	45	1	1	50	1.21
38646--38753	17	6.1	17	68	16	58	49	1	1	47	1.23
39586--39633	22	2.3	21	80	16	55	52	0	0	47	1.00
39745--39791	20	2.3	21	82	10	62	51	0	0	48	1.00
39748--39802	16	3.4	16	77	7	58	50	1	0	47	1.11
40380--40455	15	4.9	16	73	22	56	46	1	3	48	1.29
40455--40504	26	1.9	26	84	8	66	34	2	6	58	1.34
40955--41002	21	2.3	20	85	3	69	45	0	0	54	0.99
41189--41225	17	2.1	19	85	10	51	51	0	0	48	1.00
41274--41335	21	3.1	20	75	11	56	50	0	0	50	1.00
41257--41335	34	2.4	34	77	18	85	46	2	0	50	1.14
41307--41340	16	2.1	16	88	0	50	50	0	0	50	1.00
41485--41549	34	1.9	33	84	3	85	50	1	1	46	1.20
41719--41758	10	3.9	11	87	12	50	52	2	0	45	1.14
41726--41768	14	3.1	14	83	10	52	55	0	0	44	0.99
41745--41777	17	1.9	17	88	11	50	60	0	0	39	0.97
41941--41986	23	2.0	23	87	8	67	36	2	0	60	1.09
42559--42607	13	3.8	13	80	0	53	48	2	4	44	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42553--42607	26	2.1	26	86	0	74	47	3	3	45	1.38
42609--42643	17	2.1	17	94	0	61	48	0	0	51	1.00
42924--42973	26	1.9	26	84	8	66	54	0	0	46	1.00
42912--42989	21	3.8	20	77	15	56	50	0	2	47	1.15
43067--43156	42	2.1	43	82	10	105	54	2	0	43	1.12
43089--43249	78	2.1	76	80	15	179	52	2	0	45	1.14
44633--44664	14	2.4	13	94	5	55	37	0	0	62	0.95
44642--44692	19	2.6	19	70	14	50	45	1	1	50	1.24
45779--45839	12	4.9	12	73	13	52	47	0	1	50	1.10
46177--46232	25	2.3	25	81	9	62	51	5	5	37	1.47
46551--46587	17	2.1	18	90	5	58	59	13	0	27	1.35
46830--46864	18	1.9	18	94	0	61	54	0	0	45	0.99
46832--46897	25	2.6	25	78	7	71	53	3	0	43	1.16
46845--46891	13	3.6	14	78	18	57	51	4	0	44	1.21
46830--46946	14	7.5	15	71	22	59	51	2	0	45	1.21
46982--47017	18	1.9	19	88	5	56	55	2	2	38	1.29
46914--47064	18	8.1	18	65	22	53	48	2	3	45	1.32
47430--47461	5	6.6	5	92	7	57	40	0	0	59	0.97
47511--47543	13	2.4	14	90	10	50	42	6	0	51	1.26
47649--47678	16	1.9	16	93	6	53	56	0	0	43	0.99
48329--48619	143	2.0	143	82	3	354	40	8	8	41	1.67
48479--49348	181	4.8	177	74	10	590	40	8	10	40	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48197--48800	324	1.9	320	80	3	701	40	7	9	42	1.67
48488--49160	360	1.9	361	80	5	795	38	7	10	42	1.69
49393--50630	180	6.9	180	75	9	906	40	8	9	41	1.67
50880--50932	19	2.7	20	75	21	58	47	0	1	50	1.12
51291--52206	181	5.2	179	75	9	653	41	8	10	39	1.71
52405--52448	17	2.6	16	82	13	52	40	2	0	56	1.11
52739--52783	21	2.1	21	83	0	54	55	2	4	37	1.32
54009--54148	51	2.7	48	76	16	129	50	2	0	47	1.18
54027--54067	14	3.2	13	83	10	57	56	2	0	41	1.13
54097--54172	29	2.5	29	78	6	80	48	0	3	47	1.20
54338--54389	26	1.9	28	84	7	72	48	3	0	48	1.20
54453--54482	11	2.7	11	94	0	51	46	3	6	43	1.46
54809--54873	10	6.1	10	73	25	53	55	3	0	41	1.15
54834--54942	25	4.5	23	71	22	64	46	1	1	49	1.23
54922--54967	18	2.6	18	83	16	60	45	0	0	54	0.99
55056--55133	30	2.5	31	80	13	83	46	0	2	51	1.14
55088--55134	21	2.3	20	79	13	51	46	0	2	51	1.13
55520--55544	13	1.9	13	100	0	50	40	0	0	60	0.97
55865--55921	25	2.3	25	81	6	71	50	0	3	45	1.18
55877--55931	25	2.3	23	87	6	74	43	0	5	50	1.25
56092--56210	25	4.8	25	70	10	68	50	3	0	45	1.24
56170--56224	17	3.2	17	77	12	58	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56307--56352	22	2.2	20	84	7	56	41	0	2	56	1.11
57396--57469	18	4.4	16	73	17	53	45	0	2	51	1.15
57749--57819	36	1.9	36	83	8	90	46	1	1	50	1.18
57931--57982	17	3.0	16	79	17	52	48	0	1	50	1.12
57934--57989	18	2.9	19	80	19	64	46	0	3	50	1.19
58026--58090	14	4.7	13	75	17	51	47	3	3	46	1.33
58064--58096	15	2.1	16	88	5	50	48	6	0	45	1.27
58199--58270	12	5.9	12	70	15	51	44	1	1	52	1.18
58196--58273	26	3.2	25	77	17	74	43	1	1	53	1.16
58548--58606	30	2.0	30	86	6	84	47	1	3	47	1.29
59118--59195	40	2.0	41	87	5	115	55	1	0	43	1.08
59130--59160	12	2.6	12	100	0	62	67	0	0	32	0.91
59118--59237	40	3.0	40	75	12	95	54	3	0	41	1.23
59547--59603	18	2.9	20	80	15	66	49	0	3	47	1.18
59559--59593	9	3.7	9	88	11	52	54	0	0	45	0.99
59724--59769	23	2.0	24	83	12	60	52	6	0	41	1.27
59831--59870	13	3.2	13	86	13	57	47	0	2	50	1.14
59836--59914	40	2.0	41	82	12	101	45	1	2	50	1.23
59826--59920	40	2.3	40	79	12	97	47	1	2	49	1.20
59975--60019	19	2.3	20	81	7	58	57	0	0	42	0.98
60040--60071	16	2.0	16	93	0	55	37	3	0	59	1.13
60530--60608	39	2.0	39	83	9	99	51	0	2	45	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60528--60592	26	2.5	25	74	18	60	52	0	3	44	1.16
60561--60605	20	2.1	22	84	8	58	55	0	2	42	1.12
60775--60854	19	4.4	18	72	21	60	48	0	1	50	1.08
60823--60852	15	1.9	16	93	6	53	50	0	0	50	1.00
61416--61476	27	2.2	28	85	8	81	45	3	3	47	1.35
61528--61606	40	2.0	40	87	5	115	45	1	2	50	1.23
61593--61646	25	2.2	24	83	9	65	42	7	0	50	1.30
61850--61897	14	3.5	14	75	13	55	52	0	0	47	1.00
61851--61899	22	2.2	22	78	7	55	51	0	0	48	1.00
61952--61980	14	2.0	15	93	6	51	68	3	0	27	1.05
62543--62597	19	3.1	18	76	7	58	41	3	0	54	1.18
62950--63031	19	4.4	19	71	12	62	52	2	0	45	1.14
62944--63124	75	2.6	68	73	17	163	51	1	0	46	1.10
62991--63052	20	3.0	22	75	20	53	50	0	0	50	1.00
63016--63065	25	2.0	26	81	18	61	50	0	0	50	1.00
63030--63081	19	2.8	18	75	16	52	46	0	0	53	1.00
63118--63162	16	2.9	16	78	18	51	37	4	0	57	1.19
63560--63626	19	3.6	19	69	18	50	38	0	1	59	1.06
63912--63952	21	1.9	22	85	5	57	58	2	0	39	1.11
64060--64118	31	1.9	31	89	0	91	42	0	3	54	1.17
64737--64781	22	2.0	22	87	8	65	40	2	2	55	1.24
65364--65413	22	2.3	23	83	16	70	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65590--65632	21	2.0	21	82	8	52	44	2	2	51	1.27
66780--66833	19	3.0	18	79	17	67	37	12	11	38	1.79
66782--66835	16	3.2	16	84	10	72	38	11	11	38	1.76
68419--68461	18	2.3	19	84	11	54	46	0	2	51	1.13
68918--68982	17	3.5	19	79	10	71	47	3	0	49	1.17
68910--69002	6	15.5	6	68	18	52	49	2	0	48	1.13
70168--70208	19	2.0	21	86	13	59	58	0	0	41	0.98
70323--70385	21	2.8	21	75	15	56	44	0	1	53	1.10
70343--70456	62	1.9	59	82	12	142	45	2	4	47	1.36
70472--70524	15	3.6	15	78	12	56	49	1	0	49	1.12

Tables:   1   2   3   4   5