genome.fa.s579.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168404.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_62, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  141830

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 501 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104105--104202	32	3.1	31	74	20	87	54	0	0	45	1.00
104140--104240	14	7.2	13	69	20	53	52	0	0	46	1.07
104123--104200	29	2.9	27	72	20	72	56	0	0	43	0.99
104143--104199	14	4.0	15	77	22	61	56	0	0	43	0.99
104190--104240	21	2.4	21	75	15	52	47	0	1	50	1.12
104193--104277	26	3.5	25	80	12	90	47	0	2	50	1.14
104449--104481	11	2.8	12	82	17	50	48	6	0	45	1.27
104449--104483	13	2.8	13	87	12	56	48	5	0	45	1.26
104884--104943	19	3.2	18	72	21	52	48	5	0	46	1.24
105052--105703	180	3.7	176	75	11	619	38	7	11	42	1.69
105836--105878	21	2.0	21	82	8	52	48	0	2	48	1.14
105890--105947	25	2.3	26	85	11	84	50	1	0	48	1.11
105888--105945	20	2.8	21	79	12	66	51	1	0	46	1.11
106345--106404	21	2.9	21	74	16	61	36	0	6	56	1.26
107545--107595	25	2.0	25	85	14	70	52	1	0	45	1.12
107545--107692	12	11.3	13	67	16	74	48	2	3	45	1.30
107564--107605	22	1.9	22	85	9	59	57	0	0	42	0.99
107745--107801	6	10.0	6	74	11	57	52	1	0	45	1.11
107745--107801	17	3.4	17	78	4	53	52	1	0	45	1.11
107750--107801	23	2.3	23	86	0	68	51	1	0	46	1.12
107956--108024	11	5.7	12	75	21	56	47	0	1	50	1.09
108103--108205	27	3.7	28	72	22	92	45	2	1	49	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108148--108214	25	2.6	26	78	4	73	47	1	1	49	1.19
108112--108184	18	3.9	19	70	24	57	47	1	2	47	1.24
108090--108211	54	2.2	55	77	13	126	46	3	3	46	1.35
108202--108246	16	3.1	15	75	24	51	53	0	0	46	1.00
108473--108514	15	2.9	14	86	13	50	45	2	2	50	1.27
108645--108703	10	6.0	10	75	15	52	50	0	0	49	1.00
108622--108705	26	3.3	26	78	18	81	48	1	1	48	1.16
108653--108729	32	2.3	34	82	10	88	46	1	2	49	1.23
109666--110061	183	2.2	181	83	4	483	38	8	10	42	1.70
111093--111147	24	2.4	22	74	14	56	41	1	0	56	1.10
111095--111419	180	1.8	181	83	2	438	42	8	7	41	1.63
111310--111678	174	2.1	176	81	5	417	46	7	7	39	1.60
112015--112087	26	2.8	26	80	12	87	47	1	1	49	1.18
112553--112625	26	2.8	26	70	27	66	52	1	1	45	1.18
112656--112685	11	2.7	11	94	0	51	46	3	6	43	1.46
113441--113482	20	2.0	22	81	13	52	57	2	0	40	1.12
113508--113565	14	4.0	14	76	13	55	48	1	0	50	1.11
113592--113725	57	2.3	57	78	13	141	51	0	2	45	1.19
113685--113742	23	2.5	24	79	17	70	46	0	1	51	1.11
113843--113916	27	2.6	29	74	20	75	51	2	5	40	1.39
113804--113918	27	4.2	27	67	24	73	48	2	4	44	1.36
113917--114346	179	2.4	181	83	3	528	42	8	8	40	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113996--114364	181	2.1	178	83	5	465	39	9	9	41	1.69
114840--114879	21	1.9	21	85	10	55	47	0	0	52	1.00
114870--114919	17	3.0	17	74	8	50	52	0	2	46	1.12
114950--115005	10	5.6	10	72	16	53	39	0	0	60	0.97
114930--115017	30	2.8	32	74	10	92	43	2	0	54	1.12
114958--115001	15	2.9	15	80	12	54	36	0	0	63	0.95
115013--115046	15	2.3	15	89	0	50	38	5	0	55	1.24
115090--115187	14	7.1	14	69	20	55	44	2	3	50	1.29
115062--115185	19	6.5	19	68	23	55	45	2	3	49	1.31
115144--115199	27	2.1	27	86	6	78	50	0	0	50	1.00
115155--115212	26	2.2	26	82	11	66	46	1	0	51	1.11
115241--115282	19	2.2	20	86	4	59	52	0	0	47	1.00
115297--115360	25	2.5	25	75	10	58	53	0	3	43	1.16
115300--115386	33	2.6	36	78	15	96	51	1	2	44	1.21
116290--116342	22	2.4	22	81	6	54	56	0	0	43	0.99
116943--116986	20	2.1	21	83	4	54	56	2	2	38	1.24
117427--117468	16	2.5	16	92	7	66	45	0	0	54	0.99
117437--117478	14	2.9	15	86	6	61	50	0	0	50	1.00
117427--117475	14	3.6	14	81	10	57	48	0	0	51	1.00
118286--118324	18	2.1	19	86	13	55	56	0	2	41	1.13
118256--118324	17	3.9	18	79	11	63	52	2	2	42	1.31
118342--118443	15	7.2	14	70	15	59	45	4	2	47	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118572--118695	12	11.0	12	64	27	58	43	0	1	54	1.15
118628--118675	24	2.0	25	84	11	66	47	0	0	52	1.00
119201--119248	20	2.4	20	82	6	62	45	4	2	47	1.33
120221--120289	15	4.6	16	67	18	58	47	2	0	49	1.16
120404--120453	20	2.7	18	82	14	66	58	2	0	40	1.10
120987--121023	17	2.1	18	90	5	58	43	5	0	51	1.24
121069--121171	13	8.3	13	71	21	62	50	0	0	49	1.00
121060--121111	22	2.2	25	83	10	74	55	0	0	44	0.99
121060--121104	17	2.6	17	82	6	56	55	0	0	44	0.99
121091--121195	34	3.1	34	77	14	110	52	0	0	47	1.00
121076--121182	17	6.2	17	69	23	64	52	0	0	47	1.00
121203--121247	22	2.1	21	84	12	56	40	4	0	55	1.20
121243--121287	19	2.2	21	88	7	67	46	4	2	46	1.35
121217--121334	61	2.0	59	80	12	134	50	3	1	44	1.28
121712--121753	23	1.9	21	85	9	57	38	7	2	52	1.42
121888--121938	23	2.2	23	82	6	59	39	3	0	56	1.18
122069--122115	24	2.0	24	91	0	76	44	2	6	46	1.40
122226--122269	19	2.1	22	88	12	67	40	0	2	56	1.11
122228--122292	34	1.9	34	84	6	87	44	1	3	50	1.26
122373--122416	11	3.7	11	77	16	52	47	0	0	52	1.00
122366--122414	25	2.0	23	88	7	71	48	0	0	51	1.00
122312--122421	56	2.0	55	81	10	129	49	1	2	46	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122734--122772	19	2.1	18	90	4	60	43	0	0	56	0.99
122737--122790	19	2.7	19	77	13	56	48	1	0	50	1.11
122752--122836	28	3.0	29	71	13	77	51	7	1	40	1.37
123282--123310	14	2.1	14	93	6	51	58	0	0	41	0.98
123327--123356	15	2.0	15	100	0	60	60	0	0	40	0.97
123450--123505	18	3.2	18	78	19	64	51	0	1	46	1.11
123640--123680	21	2.0	21	85	9	57	60	2	2	34	1.23
124856--124899	18	2.4	18	85	11	63	50	2	0	47	1.13
124894--124939	22	2.1	22	84	8	58	47	0	4	47	1.21
124898--124945	22	2.2	21	79	13	53	45	0	6	47	1.27
125531--125579	24	2.0	24	84	0	62	51	2	0	46	1.12
127073--127801	181	4.1	181	77	4	622	41	7	8	42	1.64
128614--128661	22	2.2	22	92	0	78	54	0	2	43	1.12
128727--128781	22	2.4	24	82	11	62	49	3	1	45	1.30
129179--130153	177	5.5	178	76	9	757	41	10	7	40	1.67
130201--130238	19	2.0	19	89	0	58	47	0	0	52	1.00
130669--130711	22	2.0	22	86	9	61	39	0	6	53	1.28
130763--130801	11	3.6	11	86	3	53	58	2	0	38	1.12
130982--131021	19	2.2	17	86	8	53	50	0	0	50	1.00
131617--131677	14	4.3	14	77	8	52	49	3	0	47	1.18
131617--131669	27	2.0	27	81	3	63	49	3	0	47	1.19
131880--132451	181	3.2	179	80	6	638	43	11	6	38	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132599--132637	18	2.2	18	86	4	53	48	0	2	48	1.15
132710--132788	17	4.6	18	68	27	55	46	0	0	53	1.00
132730--132767	9	4.0	9	93	6	58	55	0	0	44	0.99
133053--133093	20	2.0	20	86	9	57	53	7	0	39	1.29
133160--133198	15	2.6	15	83	0	51	56	5	0	38	1.22
133166--133204	18	2.1	19	90	4	62	53	2	0	43	1.14
134074--134164	23	4.0	23	77	15	91	46	0	2	51	1.13
134090--134140	16	3.1	16	75	24	52	41	0	1	56	1.10
134039--134141	19	5.5	19	71	24	76	45	0	0	52	1.13
134252--134919	181	3.7	180	77	5	594	42	8	7	40	1.65

Tables:   1   2   3   4   5