genome.fa.s623.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168448.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_66, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135078

Tables:   1   2   3   4   

This is table  4  of  4  ( 471 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105810--105843	15	2.2	16	90	10	54	44	5	0	50	1.26
106231--106274	15	2.9	14	83	16	52	50	0	2	47	1.13
106179--106268	38	2.4	37	77	15	96	48	1	3	46	1.25
106313--106347	16	2.1	18	89	10	56	48	5	0	45	1.26
106479--106514	17	2.2	17	90	9	58	47	0	0	52	1.00
106473--106511	20	1.9	21	89	5	62	43	0	2	53	1.14
106693--106718	13	2.0	13	100	0	52	46	0	0	53	1.00
106703--106756	21	2.6	21	85	8	67	57	0	1	40	1.09
106712--106774	17	3.9	17	69	12	51	58	0	3	38	1.14
106716--106790	25	2.9	26	86	7	100	56	1	2	40	1.22
106872--106920	21	2.3	22	82	10	57	51	8	2	38	1.43
107075--107113	21	1.9	20	89	5	60	48	0	2	48	1.15
107190--107228	20	2.0	20	85	10	53	35	0	5	58	1.20
108303--108366	33	2.0	32	84	3	83	40	1	1	56	1.18
108599--108631	15	2.2	15	94	0	57	60	0	0	39	0.97
108717--108750	16	2.0	16	88	11	50	44	0	0	55	0.99
108723--108766	19	2.2	19	84	8	52	43	2	0	54	1.12
109715--109739	9	2.8	9	100	0	50	48	0	8	44	1.32
111324--111417	43	2.3	41	82	8	118	45	19	12	22	1.83
111748--111970	21	10.0	21	73	16	155	36	16	8	38	1.79
111841--111980	25	5.9	25	75	14	136	32	13	10	43	1.78
111776--111924	46	3.3	47	82	10	177	36	16	8	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111884--111928	14	3.4	14	70	17	51	31	11	15	42	1.82
111841--111980	71	2.0	71	91	2	228	32	13	10	43	1.78
112467--112691	123	1.9	123	83	7	291	27	12	9	50	1.72
113027--113058	17	1.9	17	93	6	57	31	3	0	65	1.08
113061--113096	12	3.2	12	88	11	58	44	0	0	55	0.99
113229--113292	32	1.9	32	84	6	83	51	6	1	40	1.36
113264--113316	19	2.8	19	78	16	56	52	3	3	39	1.37
113272--113314	21	2.2	19	83	8	50	51	2	4	41	1.35
113392--113435	15	2.8	16	79	6	54	54	0	0	45	0.99
113602--113657	21	2.6	21	78	15	60	58	1	1	37	1.19
113601--113655	23	2.5	23	80	13	64	58	1	1	38	1.20
113628--113673	18	2.3	20	85	10	60	63	2	2	32	1.19
113779--113832	14	3.7	15	83	13	53	48	0	1	50	1.11
113796--113854	27	2.1	29	81	6	68	49	0	1	49	1.11
113889--113931	19	2.4	17	84	7	59	48	4	0	46	1.22
113883--113964	33	2.4	37	80	14	102	48	3	1	46	1.27
114204--114264	22	2.6	23	78	17	63	52	1	1	44	1.20
116884--116938	9	6.6	9	76	23	57	45	0	1	52	1.11
116856--116940	25	3.4	24	78	15	84	47	1	1	50	1.16
117021--117069	19	2.6	19	78	18	57	61	4	0	34	1.15
117020--117067	16	3.3	14	78	18	53	60	4	0	35	1.16
117762--117871	46	2.4	46	82	8	136	46	1	5	46	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118566--118972	180	2.3	181	78	5	412	40	9	7	42	1.67
119408--119691	157	1.8	153	80	6	338	41	9	10	38	1.73
119799--119834	15	2.5	14	90	4	54	52	0	2	44	1.15
120681--120728	22	2.2	21	79	13	53	47	6	0	45	1.27
120687--120732	22	2.1	22	84	8	58	47	4	0	47	1.21
120727--120770	18	2.4	19	81	11	56	47	2	2	47	1.27
120802--120857	29	1.9	29	85	7	78	44	0	1	53	1.11
121056--121108	23	2.4	23	84	6	65	43	3	0	52	1.19
121085--121137	22	2.3	24	75	12	58	49	1	1	47	1.23
121078--121202	56	2.2	57	83	13	154	48	0	2	48	1.20
122701--122753	18	2.9	17	86	8	61	50	0	3	45	1.19
122880--122929	24	2.1	24	88	0	73	44	2	0	54	1.11
122978--123021	20	2.1	21	84	16	56	52	0	4	43	1.22
123236--123279	13	3.2	13	83	6	52	45	6	0	47	1.29
123236--123288	25	2.0	28	82	10	67	45	5	1	47	1.37
124457--124500	19	2.2	19	84	8	52	38	2	0	59	1.10
124712--124824	33	3.4	34	75	21	105	47	0	0	51	1.06
124741--124839	52	2.0	50	83	16	125	50	2	0	47	1.12
124733--124837	16	6.9	15	69	18	58	49	1	0	48	1.12
124766--124847	22	3.5	21	70	22	56	52	1	1	45	1.16
124726--124913	18	11.4	16	68	26	69	48	3	1	47	1.25
125339--125416	30	2.6	30	76	17	81	46	3	1	48	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125605--125664	22	2.7	22	75	10	61	48	3	0	48	1.18
125747--125799	26	2.1	25	86	10	72	45	0	0	54	0.99
125747--125794	15	3.3	15	77	13	55	45	0	0	54	0.99
125992--126055	20	3.3	19	76	20	60	50	4	1	43	1.32
126201--126263	21	3.2	20	82	10	60	47	3	1	47	1.27
126336--126415	10	8.1	10	67	21	53	48	1	1	48	1.17
126356--126417	26	2.6	25	80	12	67	53	1	0	45	1.10
126567--126668	39	2.7	38	83	11	120	44	1	0	52	1.18
126607--126668	13	5.0	12	76	11	54	46	0	0	53	1.00
126604--126693	39	2.3	39	81	7	103	50	2	0	47	1.13
127831--127868	14	2.8	14	92	4	60	55	0	0	44	0.99
127890--127930	21	1.9	22	85	14	59	48	0	2	48	1.14
128012--128058	13	3.8	12	80	8	58	44	2	0	53	1.12
128141--128762	181	3.5	179	82	5	661	38	10	9	41	1.72
128856--128893	20	1.9	20	84	10	51	57	2	2	36	1.26
129024--129082	27	2.1	28	84	9	77	47	10	1	40	1.47
129249--129286	20	2.0	18	90	10	58	42	5	0	52	1.24
129276--129315	21	1.9	21	85	10	55	40	2	2	55	1.27
129488--129556	13	5.0	13	72	19	59	37	4	1	56	1.28
129477--129550	21	3.5	21	68	12	62	40	5	1	52	1.33
129943--129992	11	4.5	11	78	16	50	42	0	2	56	1.11
130015--130069	22	2.5	21	77	8	65	47	1	0	50	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130044--130107	14	4.5	14	74	20	53	48	1	1	48	1.20
130044--130131	30	3.0	29	80	12	92	46	1	1	51	1.15
130104--130142	18	2.1	18	85	4	51	51	0	0	48	1.00
130177--130228	16	3.2	16	78	15	63	50	1	0	48	1.12
130195--130284	48	1.9	48	84	8	123	51	1	2	45	1.21
130379--130424	14	2.9	16	84	12	51	43	0	0	56	0.99
130384--130429	14	3.4	14	79	11	51	43	0	0	56	0.99
130713--130757	17	2.6	18	79	6	58	46	0	0	53	1.00
130703--130779	38	2.0	38	80	14	88	49	2	1	46	1.23
130929--130982	23	2.4	22	81	3	63	51	1	1	44	1.22
131276--131338	22	3.0	22	84	11	71	46	0	4	49	1.23
131284--131345	32	1.9	32	84	12	83	48	0	4	46	1.23
132527--132614	11	8.6	10	70	23	60	48	1	1	48	1.16
132529--132621	12	7.8	12	71	20	54	49	1	1	48	1.15
132857--132895	21	1.9	20	84	5	51	58	2	2	35	1.25
132854--132916	20	3.1	20	75	8	56	53	1	4	39	1.31
132879--132916	20	2.0	18	90	10	58	52	0	5	42	1.24
133781--133824	15	2.7	16	82	13	54	50	0	0	50	1.00
134115--134156	14	3.1	14	82	6	59	57	0	0	42	0.99
134450--134598	29	5.4	28	72	17	82	50	1	1	46	1.18
134447--134501	7	7.6	7	74	22	51	45	0	0	54	0.99
134526--134585	16	3.7	16	76	12	59	58	0	1	40	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134636--134681	19	2.3	20	88	7	67	60	0	0	39	0.97

Tables:   1   2   3   4

The End!