genome.fa.s623.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168448.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_66, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135078

Tables:   1   2   3   4   

This is table  2  of  4  ( 471 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37002--37043	12	3.2	13	80	10	50	54	2	0	42	1.13
37003--37071	29	2.3	30	75	7	70	50	1	2	44	1.25
37030--37075	16	2.8	16	78	21	51	52	0	4	43	1.21
37820--37861	18	2.3	18	87	0	57	45	7	2	45	1.44
38261--38356	37	2.7	38	74	19	100	45	0	2	52	1.12
38291--38374	28	3.1	27	78	11	73	48	0	1	50	1.08
38443--38522	8	10.4	8	70	20	55	38	1	1	58	1.14
38968--39006	21	1.9	21	84	5	53	46	0	0	53	1.00
39183--39239	19	3.2	18	73	21	57	45	0	0	54	0.99
39183--39239	10	6.3	9	74	13	55	45	0	0	54	0.99
39831--39872	12	3.5	12	83	6	50	45	0	0	54	0.99
40205--40296	21	4.5	21	73	16	86	46	0	1	52	1.07
40239--40291	18	2.8	19	82	17	67	45	0	0	54	0.99
40211--40290	42	1.9	42	82	10	101	45	0	1	53	1.08
40224--40306	18	4.3	18	71	18	51	46	1	1	50	1.16
40345--40389	24	1.9	23	90	4	72	46	2	0	51	1.13
40422--40477	21	2.7	21	81	10	71	41	0	1	57	1.09
40762--40817	13	4.4	12	74	17	51	48	1	1	48	1.22
41171--41500	181	1.8	179	79	5	387	42	7	7	42	1.62
41581--41651	22	3.5	21	74	14	60	46	2	0	50	1.16
41625--41733	53	2.0	55	83	16	138	52	2	0	44	1.21
41687--41737	26	2.0	25	88	3	75	47	0	1	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41869--41944	28	2.7	27	76	17	75	47	2	0	50	1.15
41833--41924	16	6.0	16	70	20	63	46	3	1	48	1.25
42005--42065	14	4.1	15	74	17	56	47	0	1	50	1.10
42097--42143	14	3.2	14	80	16	51	59	0	0	40	0.97
42069--42141	19	4.0	19	70	13	55	58	1	0	39	1.06
42071--42144	14	5.7	13	71	23	50	58	1	0	40	1.07
42248--42281	17	2.0	17	88	0	50	52	0	0	47	1.00
42272--42306	18	1.9	18	94	0	61	51	0	0	48	1.00
42471--42510	21	1.9	21	85	10	55	47	2	2	47	1.29
42480--42525	15	3.1	15	82	11	51	47	0	2	50	1.13
42776--42844	30	2.3	29	82	12	77	49	0	2	47	1.16
42862--42918	30	1.9	30	82	7	71	43	3	3	49	1.36
42890--42928	19	2.1	19	95	0	69	51	0	2	46	1.14
42897--42935	11	3.8	11	80	19	57	53	0	0	46	1.00
42922--42960	16	2.4	16	86	0	60	48	0	2	48	1.15
44959--45039	25	3.2	25	75	10	83	49	0	1	49	1.08
44990--45037	16	2.9	16	81	12	62	45	0	2	52	1.12
44976--45047	25	2.8	25	80	12	85	51	0	1	47	1.09
44987--45074	18	5.1	18	69	24	57	53	0	2	44	1.13
46348--46382	18	1.9	18	88	0	52	51	2	2	42	1.31
46463--46523	29	2.0	30	90	6	97	45	3	0	50	1.17
46603--46654	22	2.2	25	83	10	74	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46603--46647	17	2.6	17	82	6	56	55	0	0	44	0.99
46697--46759	21	2.9	21	85	4	81	46	4	3	46	1.40
46742--46787	17	2.8	16	78	15	58	52	0	4	43	1.21
46850--46913	20	3.3	19	76	20	60	50	4	1	43	1.32
47426--47490	24	3.0	21	70	16	60	49	1	0	49	1.10
47426--47542	46	2.7	44	79	18	113	52	1	0	46	1.11
47460--47554	14	6.6	15	68	24	62	52	1	1	45	1.14
47550--47618	36	1.9	36	82	11	88	55	1	2	40	1.24
48423--48481	21	2.7	23	82	15	72	57	0	5	37	1.21
48442--48481	22	1.9	20	90	10	62	57	0	5	37	1.21
48528--48552	13	1.9	13	100	0	50	52	0	0	48	1.00
48575--48619	17	2.6	18	82	10	58	42	0	2	55	1.12
48797--48843	12	3.5	13	77	11	51	53	0	0	46	1.00
48802--48873	25	3.3	23	72	20	57	55	0	0	44	0.99
48932--48962	14	2.2	14	94	0	53	61	3	0	35	1.12
49287--49330	15	3.0	15	76	3	54	47	2	0	50	1.13
49730--49770	20	2.0	22	90	9	68	51	2	0	46	1.14
50210--50251	17	2.4	18	80	15	52	40	0	2	57	1.12
50290--50337	17	2.5	19	77	19	55	52	0	2	45	1.12
50677--50760	10	8.1	10	70	25	59	51	0	2	46	1.14
50678--50766	20	4.4	19	74	16	72	50	0	2	47	1.13
51309--51356	15	3.0	15	79	11	51	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52014--52076	17	3.5	18	79	14	60	46	0	1	52	1.10
52033--52083	25	2.1	23	89	7	75	39	0	0	60	0.97
53073--53097	12	2.1	12	100	0	50	52	0	0	48	1.00
53059--53145	15	6.4	14	73	14	65	49	2	2	45	1.27
53187--53237	26	1.9	27	88	11	79	49	0	3	47	1.20
53276--53333	14	4.1	14	82	8	64	51	0	0	48	1.00
53452--53486	16	2.3	15	90	5	52	37	5	2	54	1.39
53461--53523	27	2.3	27	83	5	74	44	3	3	49	1.34
53567--53633	23	3.1	22	82	14	70	47	1	0	50	1.10
55273--55311	17	2.4	17	91	4	62	43	0	0	56	0.99
55434--55508	26	2.9	26	71	11	66	40	0	4	56	1.18
55607--56595	181	5.4	182	76	9	804	40	7	9	42	1.66
56770--56826	16	3.5	15	75	13	51	50	1	0	47	1.11
56844--56877	16	2.1	17	88	5	52	52	2	2	41	1.31
57114--57172	26	2.2	26	82	8	66	45	1	0	52	1.10
57222--57771	179	3.1	176	79	8	574	41	9	7	41	1.67
58590--58902	158	2.0	159	87	5	463	42	7	9	40	1.65
58947--60002	181	5.9	180	76	8	845	41	9	8	40	1.68
59424--59471	17	2.8	18	78	12	55	39	8	6	45	1.59
59004--60000	357	2.8	353	78	9	977	41	9	8	40	1.68
60222--60285	10	6.2	10	72	17	51	40	3	3	53	1.33
60519--60566	19	2.6	19	83	3	53	43	0	4	52	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60535--60578	20	2.3	19	88	4	61	40	2	4	52	1.34
60679--60740	25	2.4	26	89	7	92	54	3	0	41	1.16
60914--60954	17	2.3	18	87	8	57	39	4	0	56	1.21
60980--61011	16	1.9	17	93	6	57	50	6	0	43	1.27
61350--61387	19	2.1	18	85	14	51	39	0	0	60	0.97
61841--61889	26	2.0	24	84	15	64	55	4	0	40	1.19
62135--62871	180	4.1	177	77	7	563	41	10	8	40	1.68
63310--63352	22	2.0	21	86	4	59	48	2	2	46	1.27
63326--63367	14	3.0	14	75	10	50	50	0	2	47	1.14
63315--63377	28	2.2	29	78	13	69	50	1	3	44	1.27
63640--65647	181	11.2	180	76	8	1571	40	8	9	41	1.67
63571--65653	361	5.8	359	77	6	1797	40	8	9	41	1.68
65163--65192	15	2.0	15	93	0	51	36	0	0	63	0.95
65673--65705	18	1.9	17	88	11	50	36	9	6	48	1.60
65669--66309	181	3.5	180	78	2	667	36	10	9	42	1.72
66040--66587	301	1.8	301	81	2	688	37	12	8	41	1.73
66339--67730	181	7.7	181	79	4	1238	41	10	7	40	1.68
65857--66797	482	2.0	482	83	4	1191	37	11	9	41	1.75
65684--66973	663	1.9	664	81	3	1558	38	11	8	41	1.72
66339--67730	363	3.9	358	79	6	1353	41	10	7	40	1.68
66607--67705	180	6.1	180	78	8	672	42	10	7	39	1.66
67698--67771	36	2.1	36	94	0	130	50	6	4	39	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68053--68117	21	3.3	21	66	24	59	33	1	3	61	1.21
68054--68131	38	2.1	38	95	0	138	29	2	3	64	1.25
68140--68246	19	5.7	19	72	19	75	49	2	1	45	1.27
68179--68238	25	2.5	25	84	10	72	51	1	1	45	1.21
68301--68357	13	4.2	12	74	22	51	45	3	0	50	1.18
68307--68372	28	2.3	30	82	12	84	43	4	0	51	1.22
68851--69456	180	3.4	180	78	4	452	42	9	7	40	1.66
68770--69480	181	3.9	178	77	5	540	41	9	7	41	1.66
69477--70616	181	6.3	181	74	9	860	42	9	8	40	1.68
69542--70532	362	2.8	352	79	6	951	41	9	8	40	1.67

Tables:   1   2   3   4