genome.fa.s644.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168469.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_69, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131203

Tables:   1   2   3   

This is table  3  of  3  ( 329 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93264--93354	39	2.3	40	78	14	100	45	1	2	51	1.20
93962--94000	21	1.9	20	84	5	51	53	5	2	38	1.37
93984--94051	17	4.2	17	75	14	65	52	2	0	44	1.16
94005--94051	16	3.0	16	76	11	53	53	4	0	42	1.20
93997--94069	31	2.4	30	82	17	89	50	2	0	46	1.15
94793--94865	31	2.3	30	80	13	85	43	0	2	53	1.15
97442--99303	181	10.4	179	77	8	1352	40	9	8	40	1.70
99446--99490	22	2.0	22	87	8	65	40	2	2	55	1.24
99480--99552	29	2.5	30	74	17	73	49	0	2	47	1.15
99505--99545	13	3.2	13	80	13	50	51	0	0	48	1.00
99495--99544	18	2.9	17	82	17	59	52	0	0	48	1.00
99762--99816	23	2.5	22	83	13	69	49	0	1	49	1.11
99860--99922	27	2.3	26	83	5	72	49	3	3	44	1.34
99897--99931	16	2.3	15	90	5	52	54	2	5	37	1.39
100074--100107	13	2.6	13	85	0	50	50	0	0	50	1.00
100555--100597	22	2.0	22	86	9	61	39	0	6	53	1.28
100670--100716	16	2.9	16	84	6	60	48	0	4	46	1.21
100702--100784	26	3.1	27	71	21	77	48	2	0	49	1.14
101182--101216	18	1.9	18	88	0	52	51	2	0	45	1.16
101579--101642	27	2.4	25	78	19	67	45	1	3	50	1.27
101977--102050	26	2.6	27	75	12	69	48	0	4	47	1.20
102359--102409	19	2.7	18	81	6	57	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102380--102432	25	2.1	25	89	6	81	47	1	0	50	1.12
102911--102950	18	2.4	16	87	8	53	42	0	0	57	0.98
103028--103083	20	2.7	21	80	5	60	51	0	1	46	1.11
103035--103083	12	3.9	12	79	10	53	48	0	2	48	1.12
103058--103148	29	3.3	28	72	17	75	45	0	1	53	1.07
103738--103780	21	2.1	20	83	12	52	51	2	0	46	1.13
103844--103890	23	2.0	23	83	0	58	36	2	2	59	1.21
104082--104147	27	2.7	24	84	15	82	51	0	0	48	1.00
104110--104167	16	4.0	15	76	19	52	48	1	0	50	1.11
104364--104458	33	3.0	31	76	13	104	53	1	1	44	1.14
104405--104455	14	3.2	16	81	8	61	60	0	0	39	0.97
104365--104455	22	4.2	22	66	17	57	54	1	1	42	1.14
104512--104567	17	3.2	17	76	5	58	46	1	1	50	1.22
104547--104585	21	2.0	21	85	14	57	53	0	0	46	1.00
104748--104799	20	2.6	21	79	14	65	46	0	5	48	1.26
104770--104814	15	3.1	15	82	14	51	48	0	2	48	1.13
104899--104947	12	4.2	12	75	17	50	57	2	0	40	1.10
105227--105288	13	4.7	13	74	18	65	50	1	0	48	1.10
105199--105296	16	5.7	16	67	28	51	47	2	0	50	1.12
105247--105312	22	3.2	22	72	24	79	50	3	0	46	1.16
105227--105326	40	2.5	40	96	0	182	50	3	0	47	1.16
105244--105305	18	3.2	18	70	20	54	50	1	0	48	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105227--105326	13	7.5	13	70	20	55	50	3	0	47	1.16
106107--106152	14	3.2	14	85	11	58	47	0	0	52	1.00
106109--106160	17	3.1	18	75	25	60	48	0	0	51	1.00
106366--106414	23	2.1	23	88	0	71	34	0	2	63	1.06
107103--107141	19	2.0	20	85	5	53	53	0	0	46	1.00
107223--110985	181	20.7	181	72	12	1638	41	10	8	39	1.70
107457--108660	542	2.2	545	83	2	1481	42	10	7	38	1.69
108596--108730	70	1.9	70	93	0	234	40	11	6	40	1.68
108662--108697	19	1.9	19	88	5	56	33	11	8	47	1.69
108679--109290	337	1.8	339	81	2	762	41	9	8	40	1.67
109020--111222	362	6.2	359	75	9	1578	41	10	8	39	1.69
111400--115051	363	10.2	360	74	8	1228	41	10	8	40	1.69
111229--115657	181	24.7	180	75	7	3001	41	10	8	39	1.69
111231--121912	360	29.5	357	70	12	4196	41	9	8	40	1.68
112359--113687	178	7.4	174	75	9	389	41	10	7	40	1.68
111229--121876	718	14.7	704	70	13	3264	41	9	8	40	1.68
114758--114783	7	3.7	7	100	0	52	76	0	0	23	0.78
115676--118346	362	7.4	359	76	6	2105	42	10	7	39	1.67
117637--117669	18	1.9	17	88	11	50	42	6	3	48	1.43
115676--121912	181	34.9	177	69	14	1905	41	9	8	40	1.67
118227--118503	146	1.9	146	85	3	387	41	7	7	43	1.61
118365--121119	181	15.3	180	76	7	2044	40	9	8	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118365--121912	361	9.9	360	75	9	2537	41	9	8	40	1.68
120487--120519	18	1.9	17	88	11	50	39	6	6	48	1.53
121115--121910	180	4.4	180	81	4	892	42	9	7	40	1.66
123063--124090	180	5.8	177	77	8	806	39	7	10	42	1.68
123115--124055	355	2.6	354	79	5	920	39	7	10	42	1.68
125376--125850	181	2.7	177	80	6	528	41	8	9	40	1.67
126140--126212	31	2.4	27	74	25	67	45	2	1	50	1.24
126245--126297	16	3.3	17	80	17	60	49	0	1	49	1.12
126439--126481	14	3.0	14	86	3	50	58	0	0	41	0.98
126482--127419	181	5.1	181	74	8	750	42	10	8	38	1.68
127579--127628	23	2.1	25	85	7	68	52	0	2	46	1.12
127731--127769	17	2.4	17	86	4	53	53	0	2	43	1.14
128460--128532	27	2.7	29	75	18	75	46	4	0	49	1.21
128736--128812	28	2.6	29	82	15	88	48	1	1	49	1.17
129069--129110	15	2.9	14	85	3	57	45	0	0	54	0.99
129090--129131	14	3.0	14	86	6	50	45	2	0	52	1.13
129475--129527	11	5.1	11	76	19	51	43	0	1	54	1.11
129692--129738	16	3.1	17	82	17	59	46	0	4	48	1.21
129908--129951	9	5.0	9	86	5	54	47	0	0	52	1.00
130099--130128	13	2.3	13	94	0	51	36	3	6	53	1.44
130224--130261	19	2.0	20	84	5	51	44	0	0	55	0.99
130180--130266	31	2.9	30	75	16	81	43	0	1	55	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130206--130258	27	2.0	26	92	3	88	49	0	0	50	1.00

Tables:   1   2   3

The End!