genome.fa.s646.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168471.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_70, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129858

Tables:   1   2   3   4   

This is table  2  of  4  ( 392 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37296--38050	360	2.1	362	78	6	789	41	8	9	40	1.69
37103--38104	542	1.9	539	83	4	1331	41	9	8	39	1.69
38255--38304	18	2.7	18	84	6	64	56	0	0	44	0.99
38263--38323	10	6.4	10	74	9	56	54	1	1	42	1.20
39659--40095	181	2.4	175	82	4	498	40	12	7	38	1.72
40451--40499	18	2.9	17	77	17	57	48	2	2	46	1.25
40679--40729	22	2.4	22	83	9	61	45	0	3	50	1.20
40880--40968	9	10.3	9	72	23	59	51	1	1	46	1.15
40880--40925	23	1.9	25	86	8	69	56	2	2	39	1.24
40880--40925	15	3.3	14	82	11	51	56	2	2	39	1.24
40837--40968	59	2.2	59	78	15	139	48	1	2	47	1.23
40941--40996	19	3.0	19	73	19	55	53	0	3	42	1.18
41076--41141	29	2.3	28	75	17	71	45	1	7	45	1.41
41883--41942	30	2.0	31	83	9	79	48	1	3	46	1.28
44069--44093	12	2.1	12	100	0	50	60	0	0	40	0.97
44103--44153	11	4.7	11	76	11	52	45	0	0	54	0.99
44103--44195	44	2.1	43	82	9	109	44	1	1	53	1.14
44356--44405	26	1.9	26	84	8	66	44	0	2	54	1.11
44651--44689	11	3.5	11	82	6	51	53	0	0	46	1.00
44766--44798	9	3.3	10	87	12	50	48	0	0	51	1.00
44879--44920	13	3.4	12	80	12	50	47	2	0	50	1.14
44877--44927	24	2.1	24	92	0	84	49	3	0	47	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45263--45290	14	2.0	14	100	0	56	42	0	0	57	0.99
45301--45642	180	1.9	181	80	3	402	44	8	7	40	1.63
45809--45848	18	2.2	18	86	0	53	47	2	0	50	1.14
45826--45891	32	2.2	31	84	13	84	43	4	0	51	1.22
45843--45985	40	3.6	39	72	17	107	44	4	1	50	1.30
46290--46368	32	2.6	30	81	15	83	51	5	0	43	1.23
46349--46432	11	7.0	12	67	18	50	53	3	1	41	1.26
46517--46551	18	1.9	18	94	0	61	54	0	0	45	0.99
46519--46584	25	2.6	25	78	7	71	53	3	0	43	1.16
46532--46578	13	3.6	14	78	18	57	51	4	0	44	1.21
46668--46703	18	1.9	19	88	5	56	55	2	2	38	1.29
47415--47455	13	3.0	14	79	13	50	53	0	4	41	1.22
48116--48144	12	2.5	12	94	5	51	41	6	0	51	1.28
48471--48513	17	2.4	18	81	18	54	51	0	0	48	1.00
48452--48539	45	1.9	47	84	13	121	48	1	2	47	1.21
48478--48520	9	5.4	8	84	15	54	51	0	0	48	1.00
48467--48534	29	2.2	32	84	7	88	48	0	1	50	1.10
48644--48699	14	3.8	15	75	17	55	44	1	0	53	1.11
48660--48720	18	3.1	19	76	11	61	45	0	0	54	1.00
48700--48771	29	2.5	30	80	12	80	50	0	1	48	1.09
49153--49179	8	3.4	8	100	0	54	51	0	0	48	1.00
49622--49660	19	2.0	20	85	14	55	56	2	5	35	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49700--49749	19	2.7	20	79	17	63	48	0	2	50	1.12
50110--50164	20	2.6	21	77	16	60	41	9	3	45	1.53
50337--50389	17	3.1	17	76	7	54	43	0	1	54	1.11
50332--50387	22	2.6	23	86	8	73	42	0	1	55	1.10
50376--50409	18	1.9	18	88	5	52	47	0	0	52	1.00
50381--50477	29	3.2	29	74	21	83	50	0	2	47	1.12
50963--51633	360	1.9	359	80	7	788	41	8	9	40	1.68
50963--51692	180	4.1	181	79	7	675	40	8	9	41	1.69
52266--52316	27	1.9	26	92	4	84	47	0	3	49	1.20
52376--52410	18	1.9	18	88	0	52	42	0	0	57	0.99
53143--53209	28	2.5	26	79	15	73	49	1	1	47	1.19
53694--53726	16	2.0	17	88	5	50	39	0	0	60	0.97
53910--53962	28	1.9	27	81	11	63	49	1	0	49	1.12
53922--54005	33	2.6	31	74	9	80	53	2	0	44	1.13
54216--54259	9	5.0	9	86	5	54	52	0	0	47	1.00
54317--54397	36	2.2	34	81	14	83	39	1	6	53	1.34
54448--54495	16	3.1	16	80	16	57	50	4	0	45	1.21
54457--54521	14	4.5	14	75	15	53	50	1	0	47	1.10
54682--54743	8	7.2	8	75	20	54	46	4	3	45	1.40
54682--54731	16	3.1	16	82	5	64	48	4	4	44	1.40
54818--54856	17	2.3	16	83	12	51	51	0	2	46	1.14
54885--54964	17	4.4	18	77	14	76	50	1	2	46	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55008--55061	15	3.7	15	76	13	60	55	0	0	44	0.99
55085--55134	24	2.1	24	85	14	68	44	4	0	52	1.20
55218--55290	19	3.6	20	80	12	69	39	1	1	57	1.16
55348--55393	15	2.9	16	81	12	51	50	0	0	50	1.00
55671--55733	29	2.2	28	78	13	65	57	1	4	36	1.30
56498--56536	17	2.4	17	91	4	62	43	0	0	56	0.99
56573--56654	26	3.5	22	73	20	67	52	1	1	45	1.16
56639--56688	23	2.1	25	85	7	68	46	2	0	52	1.12
56930--57723	370	2.2	360	79	7	818	40	8	10	41	1.70
57157--57748	180	3.3	178	83	5	676	39	7	10	42	1.68
57783--57854	28	2.6	27	80	12	74	45	0	2	51	1.15
57979--58031	16	3.1	18	74	20	60	45	1	1	50	1.23
58043--58076	16	2.1	17	88	5	52	52	2	2	41	1.31
58123--58168	20	2.3	21	78	17	53	45	0	2	52	1.13
58422--58901	181	2.7	180	80	6	565	41	9	8	41	1.67
59723--60060	164	2.0	164	88	3	491	41	8	10	39	1.70
60210--61195	180	5.5	180	79	6	939	42	9	8	40	1.67
60240--61249	361	2.8	357	81	5	1042	42	9	8	40	1.67
61461--61529	10	6.7	10	73	16	52	40	7	0	52	1.29
61489--61564	18	4.1	18	75	20	68	42	3	1	52	1.28
61525--61566	17	2.4	18	80	7	52	42	2	2	52	1.27
61905--61952	5	8.8	5	82	13	51	39	4	0	56	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62344--62381	14	2.7	14	84	8	51	57	0	2	39	1.12
62423--62469	13	3.6	13	82	5	51	48	0	0	51	1.00
62414--62452	21	1.9	20	84	5	51	46	0	0	53	1.00
62423--62464	13	3.3	13	86	3	59	47	0	0	52	1.00
62486--62531	17	2.7	18	83	10	60	45	0	0	54	0.99
62479--62530	22	2.2	25	83	10	74	44	0	0	55	0.99
62577--62625	13	3.6	14	77	17	50	48	2	0	48	1.12
63024--63592	182	3.2	180	83	5	647	39	7	9	43	1.67
64034--64086	23	2.3	22	84	12	63	47	0	1	50	1.12
64048--64093	18	2.7	18	81	18	62	52	0	0	47	1.00
64047--64114	29	2.3	29	78	9	75	54	0	0	45	0.99
64048--64110	18	3.6	17	76	19	60	52	0	0	47	1.00
64306--64356	26	2.0	24	88	7	75	50	5	0	43	1.26
65308--65349	17	2.4	18	80	8	50	40	0	2	57	1.12
66234--66293	27	2.2	28	78	3	68	46	3	1	48	1.28
66307--66349	16	2.6	16	88	3	59	44	4	0	51	1.22
66816--66915	38	2.9	32	75	20	96	47	0	0	53	1.00
66816--66921	14	8.1	14	68	15	66	47	0	0	52	1.00
66978--67026	13	3.6	14	77	17	50	48	2	0	48	1.12
66967--67003	17	2.1	18	90	5	58	54	0	0	45	1.00
66976--67028	24	2.2	25	80	10	65	52	1	0	45	1.11
67823--68023	25	7.7	25	71	21	114	44	0	1	54	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67847--68141	5	58.4	5	66	26	76	42	0	2	54	1.17
67861--68128	40	6.8	39	71	23	154	42	0	2	53	1.19
67820--68180	24	16.2	22	67	25	106	42	0	3	53	1.18
67857--68019	34	5.2	31	76	20	119	43	0	1	54	1.11
67917--68143	46	4.4	49	70	25	125	42	0	2	54	1.17
68039--68137	36	2.8	34	81	13	96	40	1	3	55	1.22
68182--68976	182	4.4	179	77	7	646	42	9	8	39	1.67
69027--70146	181	6.2	179	75	9	651	41	10	7	39	1.69
69026--70224	362	3.3	355	77	8	1063	41	11	7	39	1.69
70504--71153	181	3.6	181	77	4	526	41	8	8	41	1.65

Tables:   1   2   3   4