genome.fa.s649.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168474.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_73, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125844

Tables:   1   2   3   

This is table  2  of  3  ( 351 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41023--41083	25	2.3	26	78	13	72	59	0	1	39	1.08
44095--44144	21	2.4	22	83	6	59	46	0	2	52	1.12
45575--45642	27	2.4	28	73	11	68	58	4	1	35	1.27
45577--45643	26	2.6	27	72	13	68	58	4	1	35	1.28
45988--46039	20	2.6	19	79	8	59	42	3	5	48	1.45
46150--46188	17	2.2	18	86	4	53	46	0	0	53	1.00
46813--46855	17	2.4	17	84	11	50	55	9	0	34	1.32
47037--47086	20	2.5	20	83	0	55	48	0	2	50	1.12
47048--47099	15	3.5	15	76	2	52	46	0	0	53	1.00
47093--47142	14	3.6	14	76	15	50	50	0	0	50	1.00
47104--47159	19	3.1	19	73	14	55	51	0	0	48	1.00
47122--47160	15	2.5	15	83	4	51	48	0	0	51	1.00
47136--47165	12	2.4	13	94	5	53	50	0	0	50	1.00
47044--47166	51	2.5	47	73	11	113	47	0	0	52	1.00
47299--47347	3	16.0	3	91	4	80	63	0	2	34	1.06
47357--47412	17	3.4	16	76	16	53	48	0	0	51	1.00
47343--47412	31	2.3	32	80	9	83	45	0	1	52	1.09
47358--47405	23	2.1	23	88	7	71	47	0	0	52	1.00
47350--47417	25	2.8	23	82	17	77	45	0	1	52	1.09
47949--48009	25	2.4	26	76	20	67	49	4	0	45	1.23
48158--48196	19	2.0	20	85	5	53	53	2	0	43	1.14
48876--48931	19	3.1	18	76	20	55	51	3	0	44	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48880--48927	19	2.5	20	80	16	57	54	4	0	41	1.20
48922--48965	19	2.3	19	80	7	54	54	4	0	40	1.21
49694--49743	24	2.0	25	84	3	66	48	0	2	50	1.12
49785--49830	16	2.8	18	78	15	55	60	4	4	30	1.35
49780--49858	32	2.6	29	79	16	81	59	3	2	34	1.29
49801--49858	28	2.0	29	83	9	75	62	3	1	32	1.22
49964--49993	15	2.1	15	93	6	53	60	0	0	40	0.97
50066--50115	9	5.7	9	76	4	57	48	4	0	48	1.20
50056--50116	26	2.3	25	81	10	68	50	3	0	45	1.17
50392--50508	6	19.0	6	68	22	66	46	0	1	51	1.17
50361--50508	62	2.3	67	80	14	168	44	0	2	52	1.20
50392--50666	55	5.2	53	71	21	141	45	2	1	50	1.20
50392--50497	56	1.9	55	85	12	146	46	0	0	51	1.13
50602--50644	15	2.8	16	86	6	54	44	0	0	55	0.99
50613--50675	22	2.9	22	76	7	74	47	0	0	52	1.00
50600--50661	13	4.5	13	77	16	54	48	0	0	51	1.00
50602--50679	26	2.9	27	73	17	74	47	0	0	52	1.00
51269--52683	180	7.9	183	74	9	815	43	10	7	38	1.67
51285--53748	358	7.0	354	75	9	1706	42	10	7	39	1.69
51282--52683	182	7.8	180	73	9	814	43	10	7	38	1.67
52530--52836	158	2.0	155	82	6	379	43	9	9	37	1.70
52689--53748	177	6.0	177	79	5	1025	40	11	8	40	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52707--53716	536	1.9	530	82	5	1250	40	11	8	39	1.71
54303--54341	14	2.9	14	88	11	64	43	0	0	56	0.99
54310--54377	16	4.1	16	72	12	57	42	0	1	55	1.08
54681--54754	15	4.9	15	69	19	55	45	1	5	47	1.34
54731--54760	15	2.0	15	93	0	51	50	0	0	50	1.00
54866--54912	15	3.1	14	85	14	58	48	0	2	48	1.13
55236--55273	19	2.1	18	85	14	51	52	5	2	39	1.38
55222--55292	25	2.7	26	75	14	65	50	4	1	43	1.30
55544--55596	17	3.1	17	79	12	56	54	1	0	43	1.11
55546--55601	22	2.6	23	86	8	73	55	1	0	42	1.10
56119--56617	179	2.8	179	77	5	513	39	7	10	42	1.67
57063--57100	19	2.0	19	85	10	51	50	0	0	50	1.00
58041--58129	36	2.5	36	92	1	144	37	8	10	43	1.70
58435--58502	27	2.4	28	76	11	77	60	4	0	35	1.17
58437--58503	26	2.6	27	75	13	77	59	4	0	35	1.18
61111--61139	14	2.0	15	93	6	51	41	0	6	51	1.28
60547--61765	355	3.4	356	76	7	875	41	7	9	41	1.65
59485--61856	180	13.2	181	74	7	1509	40	7	10	41	1.68
62071--62117	18	2.7	18	80	12	62	40	10	4	44	1.59
62076--62710	181	3.5	179	78	5	642	37	11	9	40	1.74
62437--62469	18	1.9	17	88	11	50	39	12	6	42	1.67
62076--62715	180	3.6	178	78	7	604	38	11	9	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62594--62830	120	2.0	120	82	0	285	32	12	10	44	1.77
62442--63010	300	1.9	300	82	1	719	37	11	8	41	1.73
62737--64134	181	7.8	181	79	3	1196	41	10	7	39	1.69
62280--63197	481	1.9	481	82	2	1135	38	12	9	40	1.75
64193--64222	11	2.7	11	94	0	51	43	6	3	46	1.46
64502--64566	28	2.5	24	79	16	60	49	3	0	47	1.17
64511--64562	25	2.0	28	88	11	83	50	1	0	48	1.12
64606--64663	13	4.6	13	77	14	59	44	0	1	53	1.10
65402--65443	22	2.0	21	90	4	66	54	0	7	38	1.28
65447--65516	32	2.2	32	80	14	76	47	0	0	52	1.00
65495--65519	13	1.9	13	100	0	50	52	0	0	48	1.00
65469--65555	34	2.6	32	79	15	88	49	1	0	49	1.08
65543--65587	17	2.6	17	82	10	56	46	0	0	53	1.00
66064--66108	24	2.0	22	82	8	54	44	4	2	48	1.35
66613--66654	21	2.0	22	85	4	59	45	0	2	52	1.13
67292--67338	22	2.1	23	84	11	62	46	2	0	51	1.13
67701--67755	27	2.1	26	82	3	65	40	1	3	54	1.28
67914--67971	16	3.7	16	70	17	50	48	0	0	51	1.00
68002--68081	36	2.2	37	78	13	85	48	1	0	50	1.08
68015--68174	27	5.9	27	71	21	70	48	0	0	51	1.05
68012--68057	24	2.0	24	87	8	69	52	0	0	47	1.00
68140--68183	18	2.3	20	77	22	58	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68352--68427	23	3.3	23	94	0	134	42	2	3	51	1.34
69247--69325	41	2.0	39	83	14	99	39	3	2	54	1.32
70103--70177	29	2.5	29	81	12	89	49	2	2	45	1.30
70306--70355	25	2.1	24	82	14	59	42	6	2	50	1.38
70524--70568	23	1.9	24	86	4	65	42	0	6	51	1.28
70593--70642	10	5.0	10	82	7	57	48	2	0	50	1.12
71490--71535	21	2.0	21	84	12	56	54	0	0	45	0.99
71962--72130	20	8.3	20	66	22	59	52	4	1	42	1.28
72057--72093	16	2.2	17	90	4	58	59	2	0	37	1.12
72037--72194	48	3.3	46	71	17	126	51	2	0	44	1.19
72116--72171	28	2.0	28	89	10	87	51	0	0	48	1.00
72057--72198	18	7.7	18	68	23	57	52	2	0	45	1.18
72311--72354	21	2.1	21	86	0	61	54	0	2	43	1.12
72325--72374	18	2.7	19	78	12	59	46	2	4	48	1.32
72418--72470	29	1.9	29	85	11	76	45	3	3	47	1.39
72543--72599	23	2.5	24	73	23	59	52	0	0	47	1.00
72544--72601	9	6.4	9	74	18	50	53	0	0	46	1.00
72594--72655	25	2.6	24	77	12	56	53	0	4	41	1.22
72577--72656	41	1.9	42	82	12	103	52	0	3	43	1.19
72739--72805	24	2.8	24	77	8	73	53	1	0	44	1.09
73325--73389	29	2.3	30	76	15	75	56	6	3	33	1.39
73464--73497	16	2.2	15	89	5	50	58	0	5	35	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73431--73522	47	1.9	46	82	12	114	52	2	3	42	1.30
73906--73992	12	7.0	12	71	21	63	48	1	0	50	1.08
73902--73996	21	4.7	19	72	14	57	49	1	0	49	1.07
73943--73982	21	1.9	21	89	0	62	42	2	0	55	1.13
73953--73996	21	2.1	21	86	0	61	45	0	0	54	0.99
74176--74214	11	3.5	11	86	6	60	48	0	0	51	1.00
74178--74222	23	2.0	23	86	8	65	46	0	4	48	1.22
74270--74325	22	2.7	20	81	8	58	53	1	1	42	1.21
74421--74497	9	8.0	9	76	21	68	44	0	1	54	1.08
74423--74521	19	5.1	20	75	13	91	46	0	1	52	1.07

Tables:   1   2   3