genome.fa.s676.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168501.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_98, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90112

Tables:   1   2   3   

This is table  2  of  3  ( 334 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32801--32832	12	2.7	12	90	0	55	40	0	0	59	0.97
32942--32982	13	3.2	13	89	6	57	41	2	0	56	1.13
32946--32982	19	1.9	19	94	0	65	43	2	0	54	1.14
33021--33116	28	3.3	29	78	11	90	46	1	3	48	1.24
33885--33930	16	2.7	16	86	10	56	36	0	6	56	1.25
34119--34184	14	4.8	14	76	16	50	43	3	1	51	1.26
34141--34210	37	1.9	36	83	11	90	45	2	1	50	1.25
34379--34460	25	3.5	24	79	15	82	47	1	1	50	1.16
34383--34476	17	5.8	17	74	18	76	47	1	1	50	1.15
34407--34481	30	2.6	30	81	10	77	50	0	1	48	1.09
34380--34483	25	4.3	23	76	21	70	49	0	0	49	1.14
34439--34499	27	2.2	29	80	11	74	49	0	1	49	1.10
34965--35003	16	2.4	16	86	4	51	35	0	2	61	1.10
35076--35135	15	3.8	16	77	18	63	48	0	3	48	1.18
35077--35147	15	4.8	14	74	17	54	47	0	2	49	1.16
35362--35416	23	2.5	22	77	13	60	47	0	3	49	1.19
35460--35522	27	2.3	26	83	5	72	49	3	3	44	1.34
35497--35531	16	2.3	15	90	5	52	54	2	5	37	1.39
35543--35573	15	2.0	16	93	6	55	45	6	3	45	1.45
35690--35714	7	3.6	7	100	0	50	56	0	0	44	0.99
35673--35711	21	1.9	21	84	5	53	56	0	0	43	0.99
36141--36204	24	2.8	23	81	6	69	51	3	1	43	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36273--36339	22	3.0	21	78	6	62	44	0	5	49	1.27
36558--36584	14	1.9	14	100	0	54	37	7	11	44	1.68
36673--36719	23	2.1	22	84	11	60	42	0	6	51	1.27
37560--37632	15	4.5	16	73	24	64	49	0	1	49	1.09
37564--37637	22	3.5	21	75	22	66	47	0	1	51	1.09
37608--37676	22	3.2	21	74	15	70	50	1	2	44	1.25
38053--38115	29	2.1	31	85	5	85	49	0	3	47	1.17
38147--38193	21	2.3	21	78	14	53	42	4	6	46	1.48
38935--38977	18	2.3	19	92	4	70	44	0	6	48	1.29
39711--39808	42	2.3	43	81	11	114	48	2	3	45	1.29
40707--40767	21	3.0	21	77	22	69	54	3	0	42	1.17
41599--41672	17	4.3	16	76	19	60	40	1	0	58	1.07
41601--41642	12	3.5	12	81	9	50	42	0	0	57	0.99
41586--41652	30	2.2	30	84	7	82	43	2	0	53	1.16
41613--41679	21	3.1	22	77	12	68	37	2	0	59	1.13
41855--41896	17	2.5	17	84	3	50	52	2	0	45	1.13
42768--42814	17	3.0	16	84	9	53	44	0	2	53	1.12
42785--42830	17	2.8	17	83	9	60	50	0	2	47	1.13
42783--42839	29	1.9	30	82	3	71	47	0	3	49	1.18
43110--43138	14	2.0	15	93	6	51	48	0	0	51	1.00
43219--43251	17	1.9	17	93	0	57	33	0	0	66	0.92
43797--43842	19	2.2	23	85	14	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43800--43894	17	5.6	17	67	20	56	46	0	1	52	1.07
43848--43925	30	2.6	30	78	15	72	46	1	1	51	1.17
44382--44436	25	2.2	25	80	0	65	45	0	3	50	1.19
45086--45161	14	5.4	13	73	25	57	46	1	0	52	1.08
45344--45383	19	2.1	19	85	0	53	45	0	0	55	0.99
45341--45381	12	3.3	12	83	6	55	43	0	0	56	0.99
45951--45992	16	2.7	16	79	17	52	52	2	0	45	1.13
46631--46698	33	2.1	31	81	10	75	42	5	2	48	1.42
46767--46820	25	2.0	26	86	10	74	48	1	3	46	1.30
47149--47186	18	2.1	19	85	5	51	50	0	0	50	1.00
47686--47717	15	2.1	15	94	0	55	56	0	0	43	0.99
47761--47826	25	2.6	25	88	7	80	54	0	1	43	1.09
47758--47819	25	2.6	24	85	9	83	54	0	1	43	1.09
48292--48345	17	3.5	16	76	21	53	59	0	1	38	1.08
48454--48488	16	2.2	16	90	10	54	34	0	0	65	0.93
48459--48527	28	2.3	31	85	9	90	42	0	0	57	0.98
48712--48784	26	2.8	26	77	10	67	47	4	1	46	1.30
48789--48888	39	2.4	42	74	16	100	42	1	7	50	1.36
49186--49241	23	2.5	23	75	13	62	48	1	0	50	1.11
49164--49240	26	3.0	26	70	11	68	48	2	0	49	1.15
49302--49337	19	1.9	19	88	5	56	41	8	11	38	1.71
49306--49343	19	2.1	19	85	5	51	39	10	10	39	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49301--49351	19	2.6	19	76	17	50	43	9	7	39	1.67
49602--49637	13	2.8	13	91	4	56	50	2	0	47	1.15
50050--50122	26	2.6	29	75	20	82	45	4	0	50	1.20
50065--50123	25	2.5	24	80	20	63	44	3	0	52	1.17
50065--50126	26	2.5	25	85	12	83	43	3	0	53	1.17
50134--50188	20	2.7	21	80	2	58	43	0	1	54	1.10
50296--50336	14	2.9	15	79	20	52	53	0	4	41	1.22
50429--50479	10	5.3	9	86	9	57	41	0	3	54	1.19
50561--50603	20	2.2	20	86	0	59	46	0	0	53	1.00
50633--50696	28	2.2	29	81	10	69	48	1	3	46	1.27
50951--51031	17	4.6	17	67	23	51	46	1	0	51	1.08
50912--51016	42	2.3	47	79	12	114	46	1	0	50	1.18
50917--51002	24	3.4	24	79	15	77	45	1	1	52	1.16
50955--51067	29	4.0	27	70	21	72	49	1	0	48	1.11
51662--51702	13	3.2	13	89	6	57	41	2	0	56	1.13
51666--51702	19	1.9	19	94	0	65	43	2	0	54	1.14
51761--51894	28	4.6	28	73	17	87	49	2	1	47	1.23
52607--52650	16	2.8	16	86	6	63	36	0	9	54	1.32
52668--52752	13	6.2	13	72	20	50	44	5	2	47	1.40
52785--52926	14	10.4	14	67	17	52	45	1	1	51	1.18
52775--52860	42	2.1	42	82	10	106	43	2	1	53	1.21
52784--52860	11	6.9	11	68	22	54	45	1	0	53	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52847--52926	26	2.9	29	68	28	75	46	1	2	50	1.23
53124--53207	23	3.8	22	78	13	91	47	1	1	50	1.16
53124--53218	21	4.5	21	75	20	83	47	1	1	50	1.15
53150--53224	28	2.7	28	80	15	84	49	0	1	49	1.09
53392--53458	23	3.0	23	72	23	61	46	0	1	52	1.09
53626--53681	17	3.2	17	75	10	60	46	1	1	50	1.22
53693--53731	16	2.4	16	86	4	51	35	0	2	61	1.10
53803--53862	15	3.8	16	77	18	63	48	0	3	48	1.18
53804--53874	15	4.8	14	74	17	54	47	0	2	49	1.16
54105--54139	16	2.3	15	90	5	52	54	2	5	37	1.39
54151--54181	15	2.0	16	93	6	55	45	6	3	45	1.45
54273--54330	29	2.0	29	83	9	75	51	0	0	48	1.00
54287--54330	14	3.1	14	81	12	54	45	0	0	54	0.99
54300--54344	23	1.9	24	81	4	56	48	4	0	46	1.22
54873--54939	22	3.0	21	78	6	62	44	0	5	49	1.27
55158--55184	14	1.9	14	100	0	54	37	7	11	44	1.68
56168--56257	22	4.2	22	75	21	68	50	0	1	48	1.08
56322--56351	15	1.9	16	93	6	53	60	0	3	36	1.14
56513--56567	21	2.6	21	79	0	65	49	1	0	49	1.11
56536--56569	15	2.3	15	89	0	50	47	2	0	50	1.16
56494--56557	24	2.7	23	82	4	74	48	1	0	50	1.10
56766--56812	21	2.3	21	78	14	53	42	4	6	46	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56943--56979	17	2.2	17	90	0	56	45	2	2	48	1.30
57531--57573	18	2.3	19	92	4	70	44	0	6	48	1.29
60200--60255	24	2.3	26	76	17	66	44	7	0	48	1.30
60381--60441	23	2.7	22	76	5	59	55	1	0	42	1.09
60416--60452	16	2.3	17	90	9	60	51	5	0	43	1.24
61089--61141	23	2.4	23	84	12	67	45	0	0	54	0.99
61278--61342	26	2.4	27	73	14	64	49	0	0	50	1.00
61280--61340	16	3.1	22	75	22	57	50	0	0	49	1.00
61719--61763	16	2.9	16	80	6	58	35	0	4	60	1.17
62276--62320	20	2.4	18	88	7	63	51	0	0	48	1.00

Tables:   1   2   3