Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold165.1
Parameters: 2 7 7 80 10 50 1000
Length:  1724686

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 876 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1587863--1587905
11
4.2
11
85
14
65
46
27
6
18
1.75
1588858--1588932
38
2.0
38
89
0
114
29
36
1
33
1.66
1592596--1592682
39
2.3
39
78
7
99
21
22
25
29
1.99
1596713--1596746
17
1.9
17
88
5
50
35
11
11
41
1.78
1608260--1608308
15
3.3
15
74
5
55
32
4
4
59
1.35
1610929--1610955
13
2.1
13
100
0
54
22
22
18
37
1.95
1613489--1613784
152
2.0
151
87
3
434
51
7
9
31
1.61
1614531--1614572
18
2.5
18
81
11
54
33
0
4
61
1.17
1617664--1617746
11
7.9
11
72
10
75
44
2
30
22
1.66
1617652--1617731
40
2.0
40
92
0
133
43
1
28
26
1.62
1620039--1620241
46
4.3
48
88
7
265
35
14
21
28
1.92
1619973--1620241
98
2.7
98
93
0
457
34
14
22
28
1.93
1620205--1620350
37
4.0
37
93
1
242
36
16
21
24
1.94
1623854--1623894
21
2.0
21
90
0
64
19
29
21
29
1.98
1630118--1630150
4
8.2
4
87
12
50
21
0
0
78
0.75
1633248--1633340
45
2.1
45
89
0
141
31
19
20
29
1.97
1633342--1633533
51
3.8
50
73
7
163
30
27
17
24
1.97
1643105--1643134
12
2.5
12
94
0
51
53
0
10
36
1.35
1662470--1662525
29
1.9
29
92
0
94
44
35
5
14
1.68
1665443--1665477
3
11.7
3
93
0
61
31
0
37
31
1.58
1673034--1673236
43
4.7
42
82
10
200
30
28
17
23
1.97
1673032--1673199
86
2.0
84
85
10
225
30
28
17
23
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1682809--1682863
29
1.9
28
82
10
67
67
3
7
21
1.31
1685333--1685471
63
2.2
63
83
2
172
23
22
33
20
1.97
1686324--1686352
15
1.9
15
100
0
58
41
6
17
34
1.76
1695413--1695450
9
4.2
9
86
0
58
31
10
10
47
1.72
1695489--1695524
18
2.0
18
94
0
63
52
13
5
27
1.63
1700281--1700321
21
2.0
21
90
0
64
29
21
29
19
1.98
1705492--1705531
16
2.5
16
91
0
62
37
2
27
32
1.70
1708607--1708645
19
2.1
19
100
0
78
43
15
20
20
1.88
1712107--1712133
13
2.1
13
100
0
54
40
14
22
22
1.90
1714755--1714810
22
2.4
24
79
8
62
67
5
0
26
1.11
1714907--1714936
15
2.0
15
93
0
51
56
6
3
33
1.42
1715710--1715990
141
2.0
141
92
4
471
30
15
13
40
1.86
1717147--1717184
17
2.3
17
90
4
60
78
2
0
18
0.86
1717147--1717184
8
4.6
8
90
6
58
78
2
0
18
0.86

Tables:   1   2   3   4   5   6   7   8

The End!