genome.fa.s1339.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold195
Parameters: 2 7 7 80 10 50 1000
Length:  1506968

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 550 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
393898--393951	28	1.9	28	96	0	99	27	22	27	22	1.99
394059--394129	26	2.7	26	80	8	90	35	22	21	21	1.96
397786--397853	33	2.1	33	100	0	136	35	17	11	35	1.87
400797--400826	15	2.0	15	93	0	51	13	36	13	36	1.84
414124--414316	50	3.7	50	80	4	188	27	20	26	24	1.99
420423--420609	50	3.7	50	85	0	248	27	23	27	21	1.99
424969--425042	37	2.0	38	89	2	114	32	20	12	35	1.89
431736--431784	22	2.1	24	88	7	75	69	14	10	6	1.35
431760--431799	21	2.0	20	85	5	53	72	7	17	2	1.19
431913--431981	25	2.8	25	78	10	79	73	1	20	4	1.07
432289--432351	19	3.4	18	82	10	65	73	0	26	0	0.84
432302--432351	19	2.7	19	90	9	77	76	0	24	0	0.80
432302--432351	9	5.4	9	81	11	57	76	0	24	0	0.80
432427--432475	20	2.5	20	86	3	64	28	36	20	14	1.92
434323--434354	12	2.7	12	90	0	55	28	6	15	50	1.68
437950--438015	32	2.1	32	94	0	114	34	24	10	30	1.89
441219--441771	75	7.3	75	79	7	589	28	16	20	33	1.95
441239--441778	149	3.5	150	82	5	507	29	16	20	32	1.95
442097--442167	30	2.4	29	84	11	92	32	16	4	46	1.67
442097--442201	30	3.6	30	73	18	78	31	18	5	44	1.73
442142--442218	30	2.7	28	77	15	77	32	19	5	42	1.73
442097--442215	58	2.1	56	80	13	127	32	17	5	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442737--442798	27	2.3	27	73	13	65	70	1	25	1	1.05
442749--442802	27	2.0	27	88	3	81	66	1	27	3	1.19
442929--442964	19	1.9	19	88	5	56	69	13	11	5	1.34
443134--443194	26	2.4	25	86	5	77	73	0	24	1	0.92
443131--443194	9	7.2	9	70	10	51	73	0	25	1	0.92
444535--444641	37	2.9	37	75	10	110	37	27	14	20	1.92
444882--444911	10	3.1	10	95	4	53	36	10	0	53	1.35
445603--445645	21	2.0	22	86	4	61	18	6	4	69	1.29
447300--447384	27	2.8	29	84	12	93	27	27	24	21	1.99
447301--447501	103	2.0	103	92	0	339	29	26	21	21	1.99
454778--455110	103	3.2	103	89	0	479	31	26	20	21	1.98
454926--455078	33	4.5	33	67	23	102	32	26	20	19	1.97
458389--458428	20	2.0	20	95	0	71	52	10	7	30	1.62
459952--459990	20	2.0	20	100	0	78	15	25	2	56	1.52
460243--460523	50	5.5	51	85	5	302	22	29	21	27	1.99
460243--460523	100	2.8	101	82	6	352	22	29	21	27	1.99
462328--462374	24	2.0	24	100	0	94	25	25	23	25	2.00
465393--465430	13	2.9	13	100	0	76	23	7	28	39	1.83
465909--466002	44	2.1	44	96	0	170	40	7	14	37	1.75
470111--470283	80	2.1	81	86	5	235	19	18	20	41	1.90
470111--470283	27	6.4	27	85	3	206	19	18	20	41	1.90
473993--474122	65	2.0	65	100	0	260	30	16	9	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
475091--475213	49	2.5	50	82	4	151	23	25	20	30	1.98
475091--475322	50	4.5	50	75	6	166	23	27	21	28	1.99
480932--481027	43	2.2	43	85	3	131	32	16	25	26	1.96
486543--486572	15	2.0	15	100	0	60	20	6	20	53	1.67
488783--488819	19	1.9	19	94	0	65	54	0	8	37	1.30
503232--509727	216	30.1	216	100	0	12992	25	22	20	31	1.98
513916--514030	45	2.6	45	92	0	194	26	19	23	31	1.98
514041--514346	88	3.5	88	87	2	445	21	24	27	26	1.99
514126--514361	45	5.3	45	67	8	160	20	25	25	27	1.99
514327--514525	44	4.5	44	78	5	215	30	25	17	26	1.97
520603--520632	13	2.2	14	94	5	53	70	3	6	20	1.25
521651--521685	18	1.9	18	94	0	61	45	14	22	17	1.84
521996--522301	27	11.3	27	85	6	345	40	21	18	19	1.91
522003--522299	54	5.5	54	86	3	398	40	22	18	18	1.91
522003--522298	81	3.6	81	87	1	421	40	21	18	18	1.91
528343--528373	2	15.5	2	100	0	62	51	48	0	0	1.00
530362--530423	19	3.3	19	76	0	61	33	22	19	24	1.97
530388--530490	53	1.9	53	96	3	190	30	29	21	19	1.97
544083--544130	22	2.2	22	84	0	60	45	14	18	20	1.85
544133--544260	32	4.0	32	88	0	193	37	20	21	21	1.94
544442--544508	11	5.7	11	70	13	53	49	25	7	17	1.73
544432--544513	24	3.4	24	93	0	137	46	24	8	20	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544529--544735	27	7.6	27	78	4	175	21	18	20	39	1.93
544526--544762	54	4.4	54	77	4	183	21	18	20	38	1.94
544526--544762	81	2.9	79	80	4	249	21	18	20	38	1.94
544620--544920	27	11.1	27	82	4	252	22	17	18	41	1.90
550920--551043	32	3.9	32	82	6	144	39	19	20	20	1.93
550920--551043	64	1.9	64	86	3	178	39	19	20	20	1.93
553895--553950	25	2.2	25	81	6	69	42	12	21	23	1.86
553907--553954	25	1.9	25	95	0	87	37	14	22	25	1.92
554771--555009	50	4.8	50	86	3	279	21	30	20	27	1.98
554839--555031	50	3.9	48	81	6	117	22	29	21	26	1.99
562274--562342	34	2.0	34	94	0	120	23	4	30	42	1.73
568117--568163	24	1.9	25	91	4	78	38	0	36	25	1.56
568123--568166	12	3.4	14	73	20	51	36	0	36	27	1.57
568830--569240	27	15.3	27	85	2	468	41	20	17	19	1.90
569277--570021	367	2.0	373	95	2	1358	21	14	28	35	1.93
569972--570060	28	3.2	28	90	1	135	22	21	22	33	1.97
570760--570926	82	2.0	82	88	2	246	38	10	14	35	1.81
577202--577229	2	14.0	2	100	0	56	50	0	0	50	1.00
577275--577367	46	2.0	46	97	0	177	32	11	8	47	1.71
581511--581568	26	2.2	27	81	3	64	39	13	22	24	1.90
581724--581878	27	5.7	27	90	1	195	21	21	18	38	1.93
581727--581878	81	1.9	81	87	0	223	20	21	18	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
582588--582653	28	2.4	28	92	2	107	28	24	22	24	1.99
582986--583103	27	4.4	27	84	8	134	16	22	20	41	1.90
585353--585426	28	2.4	31	78	17	91	31	24	21	22	1.99
585358--585423	28	2.4	27	87	7	96	28	24	22	24	1.99
585761--585900	27	5.2	27	82	3	165	17	17	20	45	1.86
585761--585900	54	2.6	54	88	2	201	17	17	20	45	1.86
587091--587215	64	2.0	63	93	1	214	29	25	18	26	1.98
588271--588336	28	2.4	28	82	7	73	30	21	22	25	1.99
588670--588787	27	4.4	27	78	8	123	19	18	16	44	1.86
588684--588801	54	2.2	54	81	3	139	18	17	21	42	1.89
601094--601151	30	1.9	31	89	10	93	41	8	18	31	1.81
601090--601159	29	2.4	28	79	13	70	41	8	20	30	1.82
601620--601959	51	6.7	51	81	6	323	30	16	24	29	1.96
601620--601963	102	3.4	102	85	4	401	29	16	24	29	1.96
601728--601957	50	4.6	50	84	4	266	29	16	23	29	1.97
602380--602531	76	2.0	76	100	0	304	36	9	21	32	1.85
603565--603722	39	3.9	39	90	6	244	42	12	7	37	1.72
603563--603722	82	2.0	82	94	0	284	43	12	7	36	1.71
603648--603713	17	3.6	17	72	18	60	43	10	9	36	1.71
604647--604684	15	2.5	15	95	0	67	7	7	39	44	1.63
605231--605680	87	5.2	87	100	0	900	23	21	22	32	1.98
623306--623489	51	3.6	51	79	3	167	25	17	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
623412--623492	26	3.2	26	62	28	64	23	14	28	33	1.94
623499--623586	45	2.0	45	88	4	133	25	19	22	32	1.97
628017--628051	16	2.2	16	89	0	52	0	34	0	65	0.93
633716--633784	34	2.0	34	97	0	129	28	26	11	33	1.91
641745--642022	130	2.1	130	98	0	538	19	23	33	24	1.97
643137--643167	15	2.0	16	93	6	55	77	6	0	16	0.97
648138--648809	335	2.0	336	99	0	1337	39	16	11	32	1.84
652664--652748	41	2.1	41	95	0	152	25	24	23	25	2.00
653369--653403	14	2.4	15	90	4	54	57	0	14	28	1.38
657832--657898	20	3.3	20	75	8	73	34	23	16	25	1.95

Tables:   1   2   3   4   5