genome.fa.s1528.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold329
Parameters: 2 7 7 80 10 50 1000
Length:  1169685

Tables:   1   2   3   4   

This is table  2  of  4  ( 432 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374786--374832	21	2.2	21	84	0	58	40	12	0	46	1.42
375466--375716	46	5.0	54	66	22	188	46	17	1	34	1.58
375540--375595	17	3.1	17	74	18	58	48	14	0	37	1.44
375571--375617	9	5.4	9	82	5	53	48	19	0	31	1.49
375445--375716	99	2.7	99	97	0	508	46	17	1	34	1.57
375641--375724	8	10.5	8	68	16	50	47	16	1	34	1.55
375668--375724	8	6.8	8	73	11	51	47	17	1	33	1.58
375641--375724	34	2.3	36	86	8	109	47	16	1	34	1.55
375569--375724	17	9.4	17	64	22	64	46	17	1	34	1.56
376200--376306	43	2.5	43	82	1	124	33	22	28	14	1.94
376228--376324	43	2.3	43	96	0	176	23	20	32	22	1.98
376343--376372	15	2.0	15	93	0	51	33	23	20	23	1.97
376579--376722	41	3.5	40	84	11	177	27	22	28	21	1.99
376900--377027	38	3.5	38	76	10	99	30	8	19	41	1.81
382402--382462	9	6.7	9	72	10	52	34	1	1	62	1.15
391360--391389	15	2.0	15	100	0	60	46	20	13	20	1.83
394102--394127	10	2.6	10	100	0	52	57	0	0	42	0.98
395013--395061	25	2.0	24	88	7	73	8	36	4	51	1.51
395380--395407	13	2.2	13	100	0	56	28	0	21	50	1.49
398131--398155	9	2.8	9	100	0	50	20	8	12	60	1.57
398156--398271	38	3.0	38	83	2	142	35	8	12	43	1.74
400873--400915	18	2.4	18	84	0	50	53	6	27	11	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400928--400959	13	2.5	13	94	0	55	65	3	31	0	1.08
404212--404274	26	2.4	26	87	10	101	34	19	9	36	1.84
405847--405876	15	2.0	15	100	0	60	40	33	0	26	1.57
405971--406059	31	2.9	31	84	3	117	50	16	2	30	1.58
406119--406162	10	4.4	10	94	0	52	70	15	0	13	1.17
406126--406182	15	3.6	15	85	7	69	64	14	0	21	1.28
406151--406192	18	2.4	18	88	7	61	61	14	0	23	1.32
406126--406164	5	7.8	5	88	0	60	66	15	0	17	1.25
410011--410072	32	1.9	32	96	0	115	48	14	22	14	1.80
412769--412885	35	3.3	35	86	1	144	17	10	33	39	1.83
413341--413379	18	2.2	18	90	0	60	41	2	17	38	1.64
418120--418163	23	1.9	22	82	17	54	38	22	0	38	1.55
418224--418331	46	2.4	43	80	13	121	35	23	17	24	1.95
418337--418523	51	3.7	51	75	5	191	31	25	18	25	1.98
418335--418519	101	1.8	101	87	3	273	31	24	18	25	1.97
422542--423207	138	4.9	137	78	8	610	30	23	18	27	1.98
422586--422813	68	3.3	67	70	13	194	28	25	20	26	1.99
423324--423452	17	7.6	17	78	3	134	34	11	12	41	1.79
423485--423524	18	2.2	19	86	4	55	37	12	2	47	1.55
426417--426465	18	2.7	18	80	0	62	36	16	4	42	1.67
426600--426624	13	1.9	13	100	0	50	56	8	0	36	1.29
433294--433346	18	2.9	18	85	0	79	39	16	0	43	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435064--435112	22	2.3	23	82	10	59	51	24	6	18	1.69
436851--436940	45	2.1	42	84	10	112	52	26	2	18	1.57
437014--437108	9	10.4	9	84	6	129	23	10	28	37	1.88
438347--438377	16	1.9	16	93	0	53	45	0	3	51	1.17
438857--438911	25	2.1	27	83	10	69	20	10	12	56	1.66
457056--457214	72	2.2	72	93	0	264	27	25	29	17	1.98
460822--460881	26	2.3	27	75	18	65	28	11	10	50	1.71
461055--461104	18	2.7	19	82	14	61	20	8	4	68	1.32
461055--461094	20	2.1	20	86	9	57	20	10	5	65	1.42
461992--462043	18	2.8	18	77	11	52	51	0	9	38	1.35
480105--480574	234	2.0	235	99	0	933	48	8	7	35	1.61
484969--485034	34	1.9	34	100	0	132	45	36	0	18	1.49
488258--488287	15	1.9	16	93	6	53	76	3	13	6	1.11
490376--490413	6	6.3	6	87	0	58	0	21	2	76	0.91
493699--493732	7	4.9	7	86	13	52	0	0	11	88	0.52
493698--493733	15	2.5	15	95	4	65	0	0	11	88	0.50
493697--493734	14	2.5	16	87	12	62	0	0	10	89	0.49
502198--502236	20	2.0	20	90	10	62	15	23	5	56	1.59
502489--502633	50	2.9	50	79	4	157	21	28	22	27	1.99
505464--505488	13	1.9	13	100	0	50	52	16	0	32	1.44
506325--506584	35	7.4	35	84	0	315	38	28	14	18	1.90
506325--506583	105	2.5	105	85	1	349	38	28	14	18	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
517098--517479	189	2.0	189	99	0	755	42	9	8	39	1.67
519036--519374	169	2.0	170	99	0	671	35	11	3	48	1.57
523748--523858	26	4.2	26	80	3	114	45	27	9	18	1.79
523748--523858	52	2.1	55	84	5	147	45	27	9	18	1.79
531227--531307	26	3.1	26	83	5	92	37	27	14	20	1.92
542209--542240	16	2.0	16	93	0	55	25	15	0	59	1.36
542368--542457	46	2.0	44	82	8	110	33	24	16	25	1.96
545290--545336	20	2.2	21	92	7	78	34	19	6	40	1.77
545306--545349	20	2.2	20	83	0	52	29	20	2	47	1.62
545778--545831	26	2.1	26	89	0	81	27	14	11	46	1.79
546075--546165	44	2.2	42	84	11	132	18	27	3	50	1.62
546085--546172	44	2.0	44	100	0	176	15	27	2	54	1.53
550503--550769	65	4.1	65	81	6	247	38	14	13	33	1.86
550564--550769	63	3.2	64	82	12	219	37	16	13	32	1.87
598715--598767	28	1.9	27	84	3	70	66	9	0	24	1.21
608402--608806	202	2.0	203	99	0	803	40	11	16	31	1.84
612560--612604	20	2.2	20	88	7	65	31	0	4	64	1.13
612568--612615	20	2.3	20	75	3	51	41	0	4	54	1.20
615107--615257	72	2.1	72	85	2	196	22	21	25	31	1.98
615856--615918	7	8.9	7	74	10	56	15	1	46	36	1.56
616057--616106	20	2.5	20	84	9	66	14	0	38	48	1.44
616236--616275	7	5.9	7	91	2	55	15	5	32	47	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
616233--616288	14	4.1	13	84	11	60	16	3	30	50	1.62
616236--616288	21	2.5	20	82	14	63	15	3	32	49	1.62
616236--616303	7	9.9	7	78	13	52	16	4	32	47	1.66
616790--616820	16	1.9	16	93	0	53	12	16	22	48	1.80
616806--617022	115	1.9	115	96	0	398	28	18	18	34	1.95
616884--617414	261	2.0	261	93	0	902	27	17	20	34	1.95
617546--617888	173	2.0	169	86	5	476	22	38	10	27	1.87
627296--627504	42	5.0	42	86	5	271	25	22	20	31	1.98
630290--630367	18	4.4	18	75	10	54	26	2	1	69	1.09
630332--630366	6	6.0	6	96	3	63	17	0	0	82	0.66
630397--630448	23	2.3	22	83	3	59	36	1	7	53	1.41
630521--630545	4	6.2	4	100	0	50	24	0	0	76	0.80
630628--630673	24	1.9	24	82	8	58	39	6	0	54	1.26
630919--630955	13	2.7	14	80	20	51	21	5	8	64	1.40
630962--630993	15	2.1	15	94	0	55	18	0	15	65	1.27
639076--639449	50	7.5	50	66	2	185	29	22	22	25	1.99
639079--639440	100	3.6	99	87	2	465	29	21	22	25	1.99
639649--639809	44	3.7	44	73	20	124	26	20	24	27	1.99
641365--641408	17	2.5	19	82	14	58	31	0	2	65	1.05
641367--641402	18	2.0	18	89	10	56	30	0	0	69	0.89
641415--641449	18	2.0	17	88	5	52	20	2	0	77	0.90
641365--641457	47	1.9	47	85	8	125	27	5	1	65	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
642433--642491	29	2.0	30	81	12	70	62	1	25	10	1.36
646942--647002	30	2.0	31	100	0	108	21	32	6	39	1.79
660594--660714	23	5.3	23	83	8	167	32	27	19	21	1.97
660601--660714	45	2.5	46	89	2	176	32	27	19	21	1.97
663615--663854	57	4.2	57	81	0	291	25	25	16	33	1.96
663650--663854	29	7.2	28	70	15	107	24	24	16	34	1.95
663616--663838	28	7.8	28	70	7	126	25	24	16	34	1.95
663565--663854	114	2.6	114	82	2	325	25	25	17	32	1.97
663812--663894	40	2.1	40	90	0	130	22	27	19	30	1.98
663854--663966	57	2.0	58	87	5	167	21	21	19	38	1.94

Tables:   1   2   3   4