genome.fa.s1528.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold329
Parameters: 2 7 7 80 10 50 1000
Length:  1169685

Tables:   1   2   3   4   

This is table  4  of  4  ( 432 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
932456--932563	53	2.0	53	100	0	216	16	26	9	47	1.77
938598--938768	72	2.4	72	81	2	191	26	21	22	29	1.99
939440--939707	136	2.0	136	96	0	491	28	6	21	44	1.76
939707--939756	20	2.5	20	87	9	75	16	0	36	48	1.46
939872--939934	14	4.6	13	75	14	56	19	3	31	46	1.65
939872--939934	21	3.0	20	75	8	63	19	3	31	46	1.65
940332--940570	115	2.1	115	91	0	388	29	18	19	32	1.96
940439--940958	261	2.0	261	95	0	934	27	17	20	35	1.94
941037--941084	23	2.1	23	96	0	87	29	14	20	35	1.93
941117--941459	173	2.0	169	89	5	530	22	39	10	27	1.86
943102--943465	9	40.6	9	68	16	186	44	17	1	35	1.59
943165--943465	25	12.6	25	66	19	110	43	17	0	37	1.56
943172--943465	16	16.4	18	70	17	125	43	17	0	37	1.54
943345--943397	19	2.8	19	85	2	72	47	18	1	32	1.60
945460--945528	21	3.3	20	85	4	84	36	18	42	2	1.66
945972--946230	42	5.9	42	76	14	167	26	22	20	30	1.98
945976--946229	136	1.9	136	85	6	354	25	22	20	30	1.98
945996--946187	93	2.0	94	85	5	255	26	21	20	31	1.98
958840--958912	22	3.3	23	88	9	107	26	27	2	43	1.68
958840--958912	11	6.5	12	77	13	84	26	27	2	43	1.68
960152--960176	7	3.6	7	100	0	50	28	0	12	60	1.32
961273--961356	44	1.9	44	92	2	143	40	0	9	50	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
962536--962591	30	1.9	28	82	13	69	60	10	14	14	1.58
975065--975340	147	1.9	147	88	3	421	42	9	5	43	1.59
975508--975543	11	3.3	11	84	0	54	86	0	13	0	0.58
978959--979401	51	9.2	50	85	11	613	27	24	15	31	1.95
979029--979415	45	8.2	45	85	10	522	28	24	16	31	1.96
978959--979401	96	4.6	96	98	0	854	27	24	15	31	1.95
984915--984962	13	3.8	13	78	10	55	60	0	2	37	1.09
984911--984961	24	2.1	25	92	3	86	60	0	3	35	1.15
985223--985277	22	2.5	22	75	16	60	58	1	0	40	1.09
996700--996771	30	2.4	30	100	0	144	22	9	22	45	1.81
1005479--1005631	66	2.3	68	79	4	168	26	22	18	32	1.97
1006764--1006816	26	2.0	26	89	7	81	20	7	13	58	1.59
1010718--1010764	24	1.9	25	86	4	69	23	2	8	65	1.31
1026734--1026791	27	2.1	27	90	0	89	27	43	12	17	1.84
1027382--1027423	14	2.9	14	89	3	66	40	23	0	35	1.55
1033435--1033488	21	2.7	19	83	10	81	37	11	3	48	1.57
1035299--1035357	23	2.5	24	86	2	84	40	15	13	30	1.86
1035579--1035610	12	2.8	12	95	4	57	56	15	9	18	1.66
1035923--1035951	14	2.1	14	100	0	58	20	13	34	31	1.92
1036273--1036357	44	1.9	44	85	4	118	42	15	8	34	1.77
1036274--1036357	22	3.8	22	82	6	98	42	15	8	33	1.77
1036638--1036668	13	2.3	14	94	5	55	45	12	0	41	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1041619--1041786	63	2.7	62	83	4	203	29	27	20	22	1.98
1050357--1050409	23	2.3	23	93	3	90	16	7	43	32	1.76
1059982--1060249	126	2.1	124	79	7	274	24	25	22	27	2.00
1060003--1060239	63	3.8	64	76	8	184	24	24	22	28	1.99
1063013--1063244	50	4.6	50	89	0	338	20	30	22	26	1.98
1065408--1065460	18	3.0	18	86	2	81	69	5	15	9	1.33
1069253--1069694	104	4.3	104	85	0	562	28	24	18	28	1.98
1069253--1069694	207	2.1	208	86	0	598	28	24	18	28	1.98
1078344--1078425	42	2.0	42	95	0	146	37	15	10	35	1.83
1078437--1078481	14	3.2	14	84	6	56	40	15	11	33	1.83
1084429--1084479	6	8.3	6	91	4	84	15	19	0	64	1.29
1087821--1087865	20	2.2	20	92	0	72	24	15	13	46	1.82
1087821--1087873	20	2.7	20	88	2	63	30	13	13	43	1.82
1091884--1091944	11	5.6	11	83	16	83	42	1	0	55	1.09
1091884--1091937	19	2.6	19	86	13	72	46	0	0	53	1.00
1100732--1100759	12	2.3	12	100	0	56	57	10	14	17	1.65
1102407--1102474	29	2.3	30	92	7	120	30	20	10	38	1.86
1106414--1106451	20	1.9	20	89	10	60	31	7	0	60	1.25
1106788--1106823	15	2.2	17	90	9	58	2	13	0	83	0.76
1106785--1106824	20	2.0	20	85	9	55	2	15	0	82	0.77
1109841--1109944	12	8.2	12	78	17	104	21	1	0	76	0.87
1109841--1109944	18	5.9	16	80	15	84	21	1	0	76	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1109893--1109944	6	8.7	6	100	0	104	17	0	0	82	0.66
1110286--1110326	15	2.6	16	84	11	57	60	9	4	24	1.47
1112948--1112990	13	3.2	13	75	12	50	39	2	9	48	1.48
1124481--1124544	32	2.0	32	100	0	128	25	15	34	25	1.95
1124670--1124733	24	2.6	24	80	14	69	32	6	20	40	1.77
1133821--1133905	35	2.4	35	96	0	152	61	12	7	18	1.54

Tables:   1   2   3   4

The End!