genome.fa.s1573.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold211
Parameters: 2 7 7 80 10 50 1000
Length:  2193984

Tables:   1   2   3   4   5   6   

This is table  1  of  6  ( 704 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
657--720	31	2.1	31	100	0	128	37	25	6	31	1.81
2037--2311	147	1.9	146	92	0	388	47	19	5	28	1.71
4206--4259	19	2.8	19	91	0	81	35	20	9	35	1.85
4228--4269	19	2.3	18	84	8	50	33	21	14	30	1.93
4423--4462	15	3.0	14	86	13	50	47	0	0	52	1.00
5143--5180	16	2.5	15	87	8	51	63	5	0	31	1.17
5403--5604	99	2.0	100	99	0	397	26	17	6	48	1.73
7422--7451	2	15.0	2	100	0	60	50	0	0	50	1.00
19356--19395	20	2.0	20	90	0	62	27	10	15	47	1.77
19335--19411	14	5.0	15	71	20	52	32	9	16	41	1.80
39418--39455	17	2.2	18	90	9	62	52	2	0	44	1.14
39916--39982	33	2.0	33	100	0	134	56	2	2	37	1.30
40223--40257	15	2.3	15	90	0	52	17	8	22	51	1.72
40231--40281	15	3.3	15	81	5	57	11	7	23	56	1.61
49523--49799	51	5.2	52	83	12	321	30	21	6	41	1.78
49627--49800	58	3.0	57	90	3	269	29	22	5	41	1.77
51269--51355	32	2.8	31	75	8	88	44	6	12	35	1.69
57665--57857	63	3.1	63	85	0	242	27	20	20	31	1.98
59442--60696	644	1.9	644	92	1	2126	21	29	9	39	1.86
73420--73478	25	2.4	25	88	0	82	20	32	20	27	1.97
73433--73483	25	2.0	25	100	0	102	15	31	19	33	1.93
83124--83183	23	2.7	23	77	7	63	15	25	18	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85795--85828	16	2.0	18	88	11	54	61	0	38	0	0.96
90833--90862	6	5.0	6	91	0	51	0	20	0	80	0.72
90833--90868	18	2.0	18	88	0	54	5	19	0	75	1.00
105228--105307	40	2.0	40	100	0	160	27	25	10	37	1.88
107584--107755	96	1.8	93	94	3	308	55	10	8	25	1.62
109514--109543	16	1.9	15	93	6	51	46	16	10	26	1.78
110841--110869	15	1.9	15	100	0	58	48	6	6	37	1.57
117978--118095	61	1.9	61	91	3	193	48	7	2	41	1.45
126238--126289	14	3.7	13	82	12	59	15	11	3	69	1.32
138405--138441	8	4.8	8	96	3	67	48	0	0	51	1.00
140077--140147	32	2.3	31	87	4	106	25	28	4	42	1.73
143656--143689	16	2.1	16	88	5	50	47	0	5	47	1.26
144007--144045	20	2.0	20	85	5	53	58	7	33	0	1.26
144766--144850	40	2.1	41	82	6	102	31	8	17	42	1.79
145057--145157	45	2.2	45	82	3	114	23	16	16	42	1.88
149339--149374	7	5.0	7	96	3	63	13	41	0	44	1.44
150531--150653	40	3.0	40	68	18	110	41	6	5	46	1.53
150492--150653	80	2.0	81	98	1	317	41	7	4	46	1.53
153416--153513	10	10.0	9	70	13	52	51	3	4	41	1.36
153493--153575	32	2.7	31	73	19	84	60	7	2	30	1.37
154325--154363	17	2.3	17	90	0	60	23	2	7	66	1.30
155503--155930	140	3.1	140	87	1	624	24	19	24	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159824--160114	120	2.4	120	99	0	573	42	2	3	51	1.30
159934--160114	28	6.2	28	69	16	102	43	1	2	51	1.25
159823--160110	61	4.8	59	71	8	242	42	2	3	51	1.31
163079--163237	41	3.9	41	89	4	223	20	20	25	33	1.97
163076--163278	41	5.0	41	86	5	211	19	19	27	33	1.96
165017--165361	125	2.8	123	92	2	564	28	15	21	35	1.93
167573--168444	114	7.6	114	92	1	1394	33	20	19	25	1.97
168860--168924	21	3.1	21	70	22	55	20	1	40	38	1.62
169109--169152	21	2.1	21	83	8	54	25	0	36	38	1.56
169249--169305	22	2.5	23	85	2	71	26	1	31	40	1.66
169815--170193	190	2.0	190	90	1	598	18	25	12	43	1.86
179283--179351	21	3.3	21	83	0	93	36	15	43	4	1.67
179336--179375	12	3.3	12	89	0	62	42	17	37	2	1.63
180248--180414	43	3.9	42	87	3	235	28	20	20	30	1.98
180248--180434	43	4.3	42	87	2	230	28	21	20	29	1.98
180248--180414	85	2.0	85	86	4	239	28	20	20	30	1.98
182808--182835	9	3.1	9	100	0	56	46	21	10	21	1.81
184280--184311	13	2.6	12	90	9	55	25	12	18	43	1.85
185510--185709	70	2.8	71	78	7	201	23	17	17	41	1.90
185502--185709	36	5.9	34	70	14	136	23	17	17	41	1.90
185651--185721	37	2.0	35	86	5	97	19	21	19	39	1.93
187153--187247	47	2.0	47	87	0	136	28	10	25	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
191834--191883	19	2.5	20	78	12	59	58	4	0	38	1.17
195343--195394	4	13.0	4	95	0	95	48	25	1	25	1.62
206420--206472	15	3.4	15	71	19	54	20	11	3	64	1.42
206417--206480	32	2.0	32	100	0	128	25	12	3	59	1.48
212870--213042	45	3.8	45	78	8	149	43	13	19	23	1.86
212924--213174	90	2.8	90	81	3	220	40	15	19	23	1.90
212966--213202	45	5.3	45	81	1	242	40	16	19	23	1.91
212966--213202	90	2.6	90	83	2	298	40	16	19	23	1.91
219953--219978	4	6.5	4	100	0	52	50	0	23	26	1.50
231927--232141	45	4.7	46	89	2	265	46	15	21	17	1.84
233914--233943	12	2.5	12	94	0	51	23	40	30	6	1.80
241485--241514	16	1.9	16	93	6	53	0	10	6	83	0.81
249510--249574	32	2.1	32	94	2	114	55	9	20	15	1.67
251733--251779	23	2.0	23	91	0	76	31	14	10	42	1.80
251870--251988	51	2.3	51	84	2	150	32	15	8	42	1.77
265981--266102	27	4.5	27	82	8	133	36	13	20	29	1.90
265979--266106	54	2.3	55	84	6	163	36	12	21	28	1.90
269939--270061	40	3.1	39	83	5	156	30	24	17	27	1.97
269953--270081	40	3.2	39	82	4	109	33	24	14	27	1.94
269929--270079	80	1.9	82	83	2	198	31	24	17	27	1.97
275543--275784	50	4.7	50	77	9	170	24	25	21	28	1.99
275692--275800	56	2.0	54	89	3	164	25	27	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
283928--283970	3	14.3	3	100	0	86	32	0	0	67	0.91
290561--290716	45	3.5	45	79	3	154	26	26	17	29	1.98
290561--290909	44	8.0	43	72	10	183	28	24	17	30	1.97
301494--301542	16	3.1	16	93	0	89	34	6	36	22	1.79
301522--301611	45	2.0	44	91	6	146	32	6	28	32	1.83
301522--301630	45	2.6	42	85	11	136	33	6	29	30	1.82
301756--301797	15	2.7	16	82	14	52	52	2	0	45	1.13
301765--301806	15	2.9	15	82	10	52	52	0	0	47	1.00
301972--302019	26	1.9	25	84	16	64	52	2	0	45	1.12
301927--302155	92	2.5	92	83	8	236	47	3	3	44	1.38
311710--311748	17	2.4	17	82	4	53	71	5	0	23	1.05
316866--316896	16	1.9	16	93	0	53	16	16	19	48	1.81
318551--318583	17	1.9	17	93	0	57	45	3	0	51	1.16
318993--319062	11	6.4	11	72	0	59	70	10	2	17	1.28
318993--319071	22	3.5	22	77	1	77	69	11	3	15	1.31
319435--319503	31	2.2	31	97	0	129	55	24	15	4	1.59
321185--321314	70	1.9	67	85	4	179	31	12	13	43	1.80
326111--326165	26	2.1	26	100	0	110	40	21	9	29	1.84
332461--332503	19	2.2	19	87	4	59	46	20	16	16	1.84
332823--332955	61	2.2	58	86	4	185	42	3	3	51	1.35
333353--333404	26	2.0	26	82	10	63	15	19	9	55	1.67
344351--344394	22	2.0	22	82	8	54	40	0	4	54	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
344360--344404	22	2.0	22	86	0	63	37	2	4	55	1.32
347443--347528	45	1.9	45	85	0	118	27	15	23	33	1.94
356799--356887	45	2.0	45	93	0	151	33	24	16	24	1.96
356898--357084	51	3.7	50	76	4	187	31	28	17	22	1.96
359211--359263	24	2.1	26	83	13	67	32	5	1	60	1.31
359211--359263	25	2.1	26	82	10	65	32	5	1	60	1.31
364654--364718	28	2.3	27	82	10	69	63	0	4	32	1.15
365065--365124	3	20.0	3	72	6	50	60	5	3	31	1.35
365065--365115	15	3.4	15	78	5	59	58	5	1	33	1.33
365762--365786	6	4.2	6	100	0	50	84	0	0	16	0.63

Tables:   1   2   3   4   5   6