genome.fa.s1573.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold211
Parameters: 2 7 7 80 10 50 1000
Length:  2193984

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 704 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369316--369369	23	2.3	23	87	0	72	33	48	5	12	1.65
370380--370422	22	2.0	22	90	0	68	60	18	11	9	1.57
370591--370620	11	2.7	11	94	0	51	36	43	0	20	1.52
371575--371703	64	2.0	65	87	1	188	46	4	20	27	1.71
371684--371719	11	3.2	11	96	4	63	50	0	33	16	1.46
371683--371728	17	2.6	18	89	6	76	52	0	30	17	1.45
371683--371728	6	7.8	6	92	4	76	52	0	30	17	1.45
371684--371728	23	2.0	23	95	0	81	51	0	31	17	1.46
376231--376313	41	2.0	41	88	4	123	24	32	18	25	1.97
383204--383329	50	2.5	48	83	8	146	22	27	21	28	1.99
383291--383373	41	2.0	41	92	0	139	22	32	18	26	1.97
384420--384461	19	2.2	19	87	8	59	73	0	2	23	0.94
384657--384682	10	2.6	10	100	0	52	23	7	0	69	1.14
386870--386903	16	2.1	16	94	0	59	61	0	0	38	0.96
407213--407279	32	2.1	33	88	2	100	56	7	2	32	1.42
412879--412927	24	1.9	26	84	12	66	61	4	6	28	1.38
413419--413447	14	2.0	15	93	6	51	62	6	3	27	1.37
413457--413596	24	6.1	22	73	19	101	52	2	7	37	1.46
413525--413627	46	2.3	44	82	12	120	55	3	4	35	1.40
417880--417906	9	3.0	9	100	0	54	22	33	11	33	1.89
426435--426734	150	2.0	150	96	0	546	24	12	19	44	1.85
430331--430480	41	3.6	41	90	2	239	30	20	25	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
430457--430506	26	1.9	26	100	0	100	20	24	32	24	1.98
430413--430570	67	2.4	67	95	0	280	25	21	27	24	1.99
430521--430570	26	1.9	26	87	0	73	18	20	32	30	1.96
430413--430603	67	2.8	67	90	2	267	26	18	27	27	1.98
430547--430655	43	2.6	42	80	9	114	21	15	25	37	1.93
430585--430699	43	2.7	43	76	11	121	20	16	27	34	1.94
451913--452094	29	6.3	29	74	9	124	25	26	12	35	1.91
451895--452094	58	3.5	57	74	7	170	25	26	13	35	1.92
452025--452121	28	3.4	29	76	12	94	28	22	11	37	1.89
457341--457469	43	3.0	42	87	5	179	24	24	3	48	1.66
458059--458097	19	2.1	19	90	4	62	56	5	17	20	1.60
461929--462183	39	6.5	39	83	0	267	18	32	15	33	1.92
461929--462169	78	3.1	78	82	0	302	18	32	14	34	1.92
461932--462157	117	1.9	117	85	0	308	19	31	14	34	1.92
461942--462183	117	2.1	117	83	0	295	18	32	14	34	1.92
466219--466288	23	3.0	23	83	8	88	28	8	22	40	1.84
473202--473260	10	5.6	10	75	11	55	71	3	5	20	1.20
473847--473909	32	2.0	32	84	3	83	55	11	4	28	1.55
474336--474392	3	18.7	3	81	3	51	54	0	8	36	1.32
487168--487212	23	2.0	23	82	8	56	31	11	22	35	1.89
494611--494795	50	3.7	50	79	5	198	27	22	28	22	1.99
494603--494787	99	1.9	97	83	7	239	28	22	28	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
494994--495032	12	3.2	12	85	7	53	53	7	23	15	1.67
494995--495043	20	2.5	20	78	15	57	57	8	24	10	1.59
501694--501736	13	3.1	14	84	12	54	60	0	0	39	0.97
513228--513302	32	2.3	32	93	0	123	25	26	2	45	1.67
520210--520262	16	3.3	16	70	19	56	18	30	3	47	1.67
520207--520281	32	2.3	32	95	0	132	24	28	2	45	1.67
520998--521055	29	2.0	29	100	0	116	37	27	17	17	1.92
521226--521252	8	3.4	8	100	0	54	25	51	22	0	1.48
526669--526847	50	3.5	50	88	4	232	22	28	22	26	1.99
533040--533093	20	2.8	20	91	2	92	59	11	9	20	1.59
535984--536030	24	2.0	24	83	4	60	48	14	14	21	1.80
558185--558790	309	2.0	309	92	0	1016	27	13	24	34	1.93
561725--561773	23	2.1	24	85	11	66	36	4	0	59	1.17
561725--561772	22	2.1	23	81	11	55	37	4	0	58	1.18
561873--561906	14	2.4	14	90	0	50	23	55	2	17	1.55
566283--566321	19	2.0	20	90	5	62	33	10	17	38	1.84
570529--570653	50	2.5	50	84	0	151	25	22	29	22	1.99
571657--571717	20	3.1	19	77	17	61	29	22	13	34	1.92
571656--571713	10	5.7	10	72	11	55	29	25	13	31	1.94
572973--573032	18	3.5	17	84	15	88	61	10	11	16	1.55
572975--573030	15	3.4	16	90	9	78	58	10	12	17	1.61
577267--577324	10	5.7	10	76	11	64	29	27	13	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
577267--577327	20	3.0	20	83	9	79	27	26	13	32	1.93
577763--577806	20	2.2	20	100	0	88	36	4	22	36	1.75
578896--579073	44	4.0	44	100	0	356	31	18	13	36	1.90
612384--612593	44	4.8	44	93	0	366	24	25	21	28	1.99
625571--625897	44	7.4	44	89	2	451	26	25	20	27	1.99
625584--625897	132	2.4	132	91	1	504	27	24	21	27	1.99
646646--646799	78	2.0	77	84	1	200	20	14	31	32	1.93
646623--646810	26	7.2	26	78	5	157	21	14	32	30	1.94
658642--658717	26	2.9	26	86	0	89	36	13	19	30	1.90
660465--660503	13	3.0	13	92	0	60	38	0	7	53	1.30
661619--661668	20	2.5	20	87	6	66	12	38	2	48	1.52
668724--668765	22	2.1	19	86	13	57	45	2	0	52	1.13
669358--669402	18	2.5	18	92	0	72	35	0	0	64	0.94
672295--672344	16	3.4	15	71	23	52	44	0	0	56	0.99
680422--680461	17	2.4	17	100	0	80	52	5	17	25	1.64
681272--681303	12	2.7	12	90	0	55	31	6	40	21	1.78
682187--682265	20	4.0	20	76	0	59	41	21	15	21	1.89
696601--696644	22	2.0	22	100	0	88	40	9	31	18	1.81
703170--703365	51	3.8	51	81	5	209	33	27	14	25	1.94
703182--703365	102	1.8	102	86	2	271	33	26	14	25	1.94
708516--708561	13	3.5	14	82	11	53	73	2	0	23	0.94
708701--708838	68	2.0	68	97	2	260	43	19	16	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
713124--713161	17	2.2	18	85	4	51	57	13	0	28	1.36
714437--714521	24	3.6	23	76	16	77	40	23	22	14	1.90
721700--721733	2	17.0	2	100	0	68	50	0	0	50	1.00
726469--726743	41	6.7	41	85	0	352	24	27	18	30	1.98
726473--726743	82	3.3	82	85	2	391	23	27	18	30	1.98
731233--731578	41	8.4	41	88	0	521	23	28	19	29	1.98
746338--746396	16	3.7	16	73	8	57	50	1	3	44	1.28
746435--746483	20	2.7	18	77	22	57	51	4	2	42	1.32
747922--747952	16	1.9	16	93	0	53	70	9	9	9	1.33
748887--748921	17	2.1	17	94	0	61	42	8	22	25	1.82
749239--750024	54	14.6	54	100	0	1572	27	18	22	31	1.97
755271--755408	66	2.1	66	91	2	224	33	14	28	23	1.94
757310--757353	14	3.2	13	78	12	52	34	4	20	40	1.73
761902--762145	118	2.1	118	96	0	452	26	19	15	38	1.92
762941--762983	18	2.4	18	80	7	52	25	30	16	27	1.97
767195--767245	24	2.1	24	100	0	102	33	11	11	43	1.78
769223--769318	45	2.1	46	82	7	115	44	3	7	44	1.47
771356--771411	29	1.9	29	86	13	80	66	3	3	26	1.25
772128--772191	31	2.1	31	96	0	119	26	14	9	50	1.73
778431--778469	20	2.0	20	90	10	62	56	5	23	15	1.59
783390--783430	21	2.0	21	90	9	66	26	0	2	70	0.99
783507--783569	3	21.3	3	93	3	101	30	0	3	66	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
786164--786217	7	7.6	7	95	4	99	12	0	42	44	1.43
787949--788190	50	4.7	50	84	3	268	21	28	23	26	1.99
795645--795816	39	4.4	39	84	3	213	28	21	27	22	1.99
795644--795816	77	2.2	77	82	6	213	28	21	27	21	1.99
818522--818635	45	2.6	44	84	1	129	45	14	17	22	1.84
822771--822810	21	1.9	21	89	0	62	35	17	15	32	1.91
822768--822820	21	2.5	21	78	3	61	35	22	13	28	1.92
828395--828428	17	2.0	17	88	0	50	32	0	17	50	1.47
829242--829509	40	6.7	39	86	4	329	18	30	17	33	1.94
829242--829508	80	3.3	80	87	1	374	18	29	17	33	1.94

Tables:   1   2   3   4   5   6