genome.fa.s1573.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold211
Parameters: 2 7 7 80 10 50 1000
Length:  2193984

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 704 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
829416--829662	20	12.3	19	67	16	101	15	35	18	30	1.92
829368--829650	141	2.0	141	94	0	494	15	33	19	31	1.93
829509--829685	40	4.4	40	96	0	327	16	35	18	30	1.93
829408--829610	101	2.0	101	94	0	352	15	33	18	31	1.93
829331--829685	181	2.0	181	92	0	593	16	32	18	32	1.93
837663--837732	25	2.8	25	77	16	81	28	21	21	28	1.99
845709--845943	50	4.6	50	80	5	188	28	20	27	23	1.99
859301--859638	29	11.8	30	72	11	169	26	16	20	36	1.94
862371--862487	39	3.0	39	79	0	135	31	19	34	14	1.92
870188--870220	10	3.1	11	86	8	50	0	21	0	78	0.75
870187--870216	13	2.2	14	94	5	53	0	20	0	80	0.72
880287--881197	132	6.9	132	92	1	1394	28	19	23	28	1.98
882725--882776	26	2.0	27	88	3	79	30	9	3	55	1.50
883433--883627	98	2.0	98	93	0	336	28	11	24	35	1.91
884196--884248	28	2.0	26	85	10	72	39	7	3	49	1.49
884593--884640	3	17.0	3	83	12	66	64	2	0	33	1.05
897141--897180	20	2.0	20	90	0	62	60	0	0	40	0.97
901115--901194	23	3.5	23	72	13	74	33	30	17	18	1.94
901119--901229	46	2.4	46	87	0	168	33	30	17	18	1.94
901144--901217	23	3.2	23	68	21	64	31	32	17	18	1.95
905967--905998	16	1.9	17	93	6	57	28	0	0	71	0.86
905987--906053	9	7.2	9	72	12	55	34	1	2	61	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
913530--913757	42	5.4	42	86	5	282	29	22	22	25	1.99
914941--915064	41	3.0	41	96	1	223	29	28	22	19	1.98
915008--915472	113	4.1	113	90	0	777	30	25	23	21	1.99
915008--915472	227	2.1	227	92	1	781	30	25	23	21	1.99
916159--916218	27	2.2	27	82	8	68	48	1	0	50	1.11
916524--916563	12	3.5	12	93	6	66	57	7	0	35	1.27
922411--922444	13	2.6	13	85	0	50	64	0	14	20	1.28
923331--923374	12	3.7	12	79	8	54	70	2	25	2	1.10
928428--928456	5	5.8	5	100	0	58	20	0	0	79	0.74
930648--930832	54	3.5	52	86	5	246	32	16	25	24	1.96
930649--930856	54	3.9	51	82	10	231	31	16	25	25	1.96
930969--931067	29	3.3	29	88	2	153	17	15	26	41	1.88
930969--931092	29	4.2	29	83	7	115	16	16	25	42	1.87
938587--938669	25	3.3	25	81	3	87	32	19	22	25	1.97
938626--938696	25	2.9	25	85	6	83	28	23	22	25	2.00
946704--946738	5	6.6	5	90	9	52	77	0	20	2	0.90
948549--948649	29	3.5	29	78	5	105	27	14	23	33	1.94
955311--955363	22	2.4	22	87	0	79	39	18	13	28	1.88
959299--959337	19	2.0	19	85	5	51	35	2	2	58	1.25
960756--960797	11	3.3	13	83	12	52	61	0	0	38	0.96
962561--962596	18	2.0	18	100	0	72	38	11	22	27	1.88
962556--962602	18	2.4	21	75	20	64	36	10	19	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
973854--973891	20	1.9	20	89	10	60	21	18	31	28	1.97
975717--975856	6	23.0	6	72	4	93	7	17	2	71	1.23
979164--979246	26	3.2	26	65	27	68	30	12	25	32	1.92
979160--979501	102	3.4	102	82	6	412	27	14	26	31	1.95
979160--979496	51	6.7	50	76	8	292	27	14	26	31	1.95
986793--987131	51	6.7	51	76	7	309	28	15	26	30	1.96
986793--987131	102	3.4	101	80	7	370	28	15	26	30	1.96
989504--989556	28	1.9	27	84	3	70	50	5	11	32	1.61
989648--989686	20	2.0	20	89	0	60	20	17	33	28	1.96
993341--993531	50	3.8	50	76	0	150	22	26	20	29	1.99
995835--996025	50	3.7	50	82	4	220	23	27	21	27	1.99
995835--996020	100	1.8	104	84	6	263	23	27	20	27	1.99
1013991--1014058	24	2.8	24	76	8	66	33	20	27	17	1.95
1014053--1014160	25	4.4	25	78	8	98	37	19	22	21	1.95
1016766--1016799	11	3.2	11	83	8	52	26	32	11	29	1.92
1019504--1019579	24	3.1	24	73	12	66	38	21	23	17	1.93
1019501--1019611	49	2.3	50	79	7	129	37	19	23	18	1.94
1019533--1019652	25	4.8	26	77	10	85	35	20	24	20	1.96
1031147--1031189	22	2.0	22	90	0	68	30	9	4	55	1.52
1032800--1032867	34	2.0	34	83	11	86	25	25	20	29	1.99
1036246--1036309	21	3.3	20	68	28	57	34	25	6	34	1.81
1036243--1036324	37	2.2	37	95	0	146	32	25	4	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1043818--1043889	33	2.3	31	81	9	90	30	20	29	19	1.97
1043828--1043908	33	2.5	33	95	0	144	34	18	25	20	1.96
1043956--1044135	43	4.2	43	95	0	306	21	30	22	26	1.98
1051112--1051251	73	1.9	72	89	1	217	24	22	25	27	1.99
1053156--1053277	65	1.9	65	94	0	217	27	22	25	24	2.00
1054302--1054371	13	5.3	13	80	1	77	35	21	2	40	1.68
1054301--1054397	39	2.5	38	78	6	95	37	17	3	42	1.65
1055186--1055224	18	2.2	18	86	9	53	28	5	2	64	1.28
1055545--1055582	14	2.7	14	95	0	67	28	23	7	39	1.83
1056617--1056693	28	2.8	28	87	0	100	31	23	23	22	1.99
1056975--1057188	27	7.9	27	85	3	218	17	19	21	41	1.90
1057897--1057963	5	13.8	5	93	6	120	61	0	38	0	0.96
1059664--1059960	43	6.9	42	87	2	333	28	28	17	24	1.97
1059664--1059960	128	2.3	128	85	2	380	28	28	17	24	1.97
1061936--1062201	86	3.1	84	82	4	291	41	15	8	33	1.78
1062272--1062342	30	2.4	30	95	0	124	52	15	1	30	1.52
1062429--1062750	168	1.9	168	86	2	459	46	14	10	28	1.78
1068944--1069080	7	19.0	7	69	16	66	39	39	1	19	1.61
1069033--1069080	15	3.3	15	82	5	62	45	35	0	18	1.50
1069271--1069320	21	2.4	20	80	9	55	42	40	0	18	1.50
1069288--1069335	15	3.3	15	79	5	53	43	35	2	18	1.62
1068871--1069459	255	2.2	260	89	5	877	43	23	2	30	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1069683--1069958	41	6.7	41	81	3	250	30	27	19	22	1.98
1069688--1069958	82	3.3	82	79	4	280	30	28	19	21	1.97
1069675--1069958	123	2.3	122	82	6	358	30	27	19	22	1.98
1070007--1070119	40	2.8	40	78	15	117	23	22	23	30	1.99
1071736--1071776	20	2.0	20	85	9	55	51	4	7	36	1.51
1080321--1080378	27	2.1	27	100	0	116	22	22	22	32	1.98
1083797--1083873	28	2.8	28	90	2	120	31	22	24	22	1.98
1083798--1083886	28	3.2	28	87	4	119	30	23	23	22	1.99
1084230--1084451	27	8.2	26	75	16	150	19	18	19	42	1.90
1084246--1084451	54	3.8	53	78	10	204	19	18	19	42	1.90
1084229--1084451	81	2.8	80	81	9	231	20	18	19	42	1.90
1085948--1086008	24	2.5	24	78	0	68	18	18	21	42	1.89
1086003--1086066	19	3.3	20	72	14	62	14	15	25	45	1.83
1105051--1105089	16	2.5	15	84	8	60	23	17	30	28	1.97
1109835--1109884	25	2.0	25	92	0	82	34	10	14	42	1.78
1111942--1111991	22	2.4	22	83	9	70	36	0	28	36	1.58
1118586--1118620	18	1.9	18	88	11	54	20	5	2	71	1.19
1135821--1135993	52	3.3	52	92	2	287	26	13	30	29	1.94
1138069--1138110	20	2.1	20	86	0	57	40	19	9	30	1.83
1158435--1158667	20	11.6	20	64	8	80	21	25	19	34	1.96
1158438--1158660	40	5.6	40	84	3	279	21	26	18	34	1.96
1158438--1158696	40	6.5	40	82	4	157	21	25	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1158449--1158696	80	3.1	79	81	5	214	21	25	18	34	1.96
1158437--1158696	120	2.2	120	80	7	296	21	25	18	34	1.96
1159558--1159584	3	9.0	3	100	0	54	33	0	33	33	1.58
1168717--1168794	29	2.7	29	86	4	104	34	25	11	28	1.91
1178762--1178942	41	4.4	42	65	20	105	37	4	11	47	1.59
1178703--1178943	123	2.0	123	96	0	446	35	6	9	48	1.61
1180211--1180239	14	2.0	15	93	6	51	34	20	20	24	1.97
1185961--1186013	14	3.8	14	87	9	81	33	20	7	37	1.81
1186537--1186663	65	2.0	65	95	0	227	22	22	8	45	1.80
1189767--1189839	34	2.1	33	83	14	94	60	4	6	28	1.41

Tables:   1   2   3   4   5   6