genome.fa.s158.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold149
Parameters: 2 7 7 80 10 50 1000
Length:  2538714

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 918 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423164--423209	6	7.7	6	90	9	76	2	17	0	80	0.81
423164--423210	24	1.9	25	95	4	87	4	17	0	78	0.90
423169--423221	24	2.2	24	86	0	70	5	20	1	71	1.16
426017--426090	34	2.2	34	82	4	96	27	17	24	31	1.97
426998--427052	21	2.6	21	97	0	101	21	18	20	40	1.92
432124--432169	6	7.7	6	88	9	67	4	17	0	78	0.91
432129--432181	24	2.2	24	82	0	61	7	20	1	69	1.22
434972--435057	34	2.5	33	85	5	109	25	18	25	30	1.98
488684--488725	18	2.3	19	79	4	50	71	14	2	11	1.24
490312--490401	40	2.2	40	96	0	162	30	3	22	44	1.69
491644--491701	28	2.1	28	100	0	116	39	22	20	17	1.92
511168--511236	1	69.0	1	91	0	75	1	0	8	89	0.53
512433--512457	4	6.2	4	100	0	50	76	0	24	0	0.80
512845--513176	162	2.0	164	98	1	641	35	7	13	43	1.72
520126--520175	21	2.3	23	82	6	59	68	2	2	28	1.12
521244--521293	21	2.3	23	82	6	59	68	2	2	28	1.12
522317--522400	42	2.0	42	100	0	168	35	2	11	50	1.52
523395--523446	19	2.8	19	88	2	79	32	1	0	65	1.04
523394--523454	9	6.4	10	74	14	58	31	1	1	65	1.12
523393--523453	19	3.3	18	78	13	70	32	1	1	63	1.13
525012--525055	21	2.0	22	95	4	81	56	0	18	25	1.41
525012--525055	22	2.0	20	87	12	61	56	0	18	25	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
529736--529769	15	2.3	15	89	0	50	38	17	8	35	1.81
535564--535618	27	2.0	28	96	3	103	29	16	18	36	1.92
537707--537793	25	3.5	24	76	9	77	22	5	1	70	1.16
544196--544232	6	6.2	6	90	9	58	18	0	0	81	0.70
544188--544236	24	2.1	23	85	11	64	24	0	0	75	0.80
544196--544244	24	2.0	24	84	7	64	20	2	2	75	1.00
544231--544427	97	2.0	97	98	0	376	40	18	12	28	1.86
548465--548495	15	2.0	16	93	6	55	19	19	19	41	1.90
555954--555989	16	2.3	16	90	4	56	25	2	16	55	1.55
558148--558199	24	2.2	24	89	0	77	34	3	7	53	1.48
565849--565910	31	2.0	31	96	0	115	29	22	24	24	1.99
569345--569419	27	2.8	27	83	0	78	29	33	14	22	1.94
570230--570273	23	1.9	23	81	9	54	27	18	4	50	1.66
580877--580930	3	18.0	3	88	0	81	1	29	3	64	1.21
581733--581793	20	3.2	20	65	15	56	37	14	9	37	1.80
581719--581793	37	2.0	38	97	2	143	37	13	10	38	1.79
581719--581775	17	3.2	17	67	13	51	35	12	12	40	1.80
586176--586422	50	4.9	50	87	0	314	22	31	20	25	1.98
586440--586535	44	2.2	44	94	1	165	26	20	12	40	1.88
595154--595235	41	2.0	42	87	2	121	32	26	25	14	1.95
607587--608107	259	2.0	260	99	0	1035	44	6	5	42	1.55
611287--611334	19	2.6	19	78	18	57	60	0	2	37	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
619439--619572	39	3.4	39	91	2	207	32	1	19	46	1.59
619458--619549	8	11.8	8	71	13	57	32	0	18	48	1.48
619434--619594	39	4.1	39	86	4	103	33	3	19	44	1.66
622527--622600	31	2.4	29	81	14	87	64	2	2	29	1.21
622879--622925	20	2.3	20	85	7	60	29	8	34	27	1.87
623350--623406	11	5.2	11	75	6	53	70	12	14	3	1.30
623359--623406	23	2.1	23	92	0	78	70	10	14	4	1.29
624363--624438	23	3.6	20	80	16	82	42	2	0	55	1.14
624363--624421	23	2.7	23	89	5	86	40	3	0	55	1.16
624824--624858	17	2.1	17	88	0	52	34	5	20	40	1.76
635430--635500	18	3.9	18	68	5	54	19	11	9	59	1.59
636920--636965	3	15.3	3	100	0	92	34	0	0	65	0.93
643016--643324	44	6.9	44	74	7	246	31	18	21	27	1.97
643202--643315	41	2.7	44	86	4	144	27	21	22	28	1.99
643602--643806	44	4.7	44	69	8	159	31	16	21	30	1.95
643596--643888	129	2.3	129	83	3	383	31	17	20	30	1.96
644274--644322	14	3.4	15	77	8	57	30	8	16	44	1.76
644291--644357	34	1.9	35	87	3	100	32	8	11	46	1.72
644688--644774	43	2.0	43	84	0	111	44	19	6	28	1.76
657772--657836	26	2.5	26	97	0	121	26	3	21	49	1.64
658352--658382	16	2.0	15	93	6	53	35	6	12	45	1.68
658415--658439	7	3.6	7	100	0	50	36	0	16	48	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
658473--658498	12	2.2	12	100	0	52	30	23	19	26	1.98
676182--676265	37	2.3	37	89	4	125	26	9	26	38	1.87
707436--707486	24	2.1	24	85	0	66	54	3	5	35	1.43
708983--709099	44	2.7	44	86	5	164	28	24	18	28	1.98
709160--709689	44	12.2	44	69	13	235	27	20	19	32	1.97
709333--709689	130	2.8	128	86	7	463	25	21	20	32	1.98
709683--710070	44	8.7	45	74	3	354	23	21	26	28	1.99
709677--710083	89	4.6	89	86	1	548	22	21	25	29	1.99
710357--710413	24	2.4	24	87	0	87	33	22	8	35	1.85
711294--711346	19	2.7	19	80	16	63	0	18	3	77	0.92
716461--716507	24	2.0	23	84	16	60	53	8	6	31	1.57
718112--718165	18	2.9	18	72	2	54	40	38	1	18	1.61
718261--718327	9	7.4	9	94	0	98	25	8	25	40	1.84
724593--724723	45	2.9	45	96	0	235	25	16	24	32	1.96
727797--727832	18	2.0	18	100	0	72	33	33	5	27	1.80
732545--732719	88	2.0	87	85	5	237	34	21	9	34	1.86
732852--732973	56	2.1	59	83	7	153	29	5	4	60	1.38
732990--733036	18	2.5	18	82	6	58	25	2	2	70	1.10
733104--733324	87	2.5	88	79	8	241	32	9	19	38	1.83
734527--734556	6	5.0	6	100	0	60	0	16	0	83	0.65
743957--744527	68	8.4	68	82	0	615	32	17	23	25	1.97
743957--744527	136	4.2	136	85	2	698	32	17	23	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
743958--744527	204	2.8	203	83	0	701	32	17	23	25	1.97
752153--752201	21	2.4	19	78	18	53	26	14	18	40	1.89
752158--752203	21	2.1	21	88	8	65	26	15	17	41	1.88
754091--754120	15	2.0	15	93	0	51	13	23	3	60	1.48
755154--755615	239	1.9	239	90	0	728	29	8	25	36	1.85
758186--758231	21	2.3	20	78	14	51	30	6	17	45	1.73
765087--765278	50	3.8	50	82	4	208	22	30	20	26	1.99
771888--772006	11	11.4	11	75	20	71	57	0	4	37	1.18
771855--771995	41	3.4	40	85	9	176	60	0	2	35	1.16
771938--771972	17	2.0	18	94	5	63	62	0	0	37	0.95
771911--771973	10	6.3	10	76	18	51	66	0	1	31	1.01
776010--776041	8	4.0	8	100	0	64	25	0	0	75	0.81
782816--782866	9	6.0	8	81	18	59	23	5	0	70	1.09
782830--782864	13	2.7	13	100	0	70	22	5	0	71	1.07
782816--782866	4	12.0	4	80	19	59	23	5	0	70	1.09
783262--783320	15	4.1	14	78	8	57	35	38	10	15	1.81
784440--784488	20	2.5	20	78	15	57	38	4	0	57	1.18
789766--789791	3	8.7	3	100	0	52	65	0	34	0	0.93
792695--792766	23	3.0	23	74	13	67	41	4	5	48	1.45
794487--794520	15	2.2	16	89	5	52	38	0	0	61	0.96
794600--794642	22	2.0	22	95	0	77	30	11	6	51	1.65
795456--795497	19	2.4	17	88	11	59	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
795931--795981	16	3.2	16	86	5	68	39	1	27	31	1.68
796312--796385	29	2.5	29	86	4	94	47	14	14	22	1.82
805800--805860	30	2.0	30	96	0	113	26	21	16	36	1.94
816717--816918	9	21.9	9	70	17	87	65	0	2	30	1.14
816717--816837	18	6.7	18	74	11	97	68	0	2	28	1.08
816865--816915	19	2.7	19	78	0	57	70	0	3	25	1.04
818668--819118	229	2.0	229	98	0	875	30	15	15	37	1.89
822155--822316	79	2.0	80	95	1	290	35	10	16	37	1.83
822524--822569	18	2.6	18	82	6	58	30	2	0	67	1.03
828546--828574	9	3.2	9	100	0	58	31	10	10	48	1.71

Tables:   1   2   3   4   5   6   7   8