genome.fa.s158.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold149
Parameters: 2 7 7 80 10 50 1000
Length:  2538714

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 918 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2307958--2307992	6	5.8	6	89	0	52	8	5	0	85	0.73
2307958--2307992	18	1.9	18	100	0	70	8	5	0	85	0.73
2308164--2308692	270	2.0	271	91	1	864	30	20	19	28	1.97
2310376--2310424	19	2.5	20	80	6	57	42	12	18	26	1.85
2311839--2312129	107	2.7	109	90	2	444	35	20	14	29	1.92
2312297--2312350	26	2.0	27	82	10	67	68	5	5	20	1.30
2319150--2319200	18	2.8	18	87	0	75	47	0	1	50	1.12
2334675--2334825	38	3.9	38	73	7	126	35	24	19	20	1.96
2334722--2334770	19	2.6	19	83	0	62	38	22	16	22	1.92
2334675--2334844	77	2.2	76	82	7	202	34	24	21	20	1.97
2334754--2334902	58	2.6	58	83	1	174	32	24	23	20	1.98
2336252--2336311	11	5.5	11	75	13	54	65	1	0	33	1.03
2337316--2337366	17	3.0	17	82	5	59	72	0	19	7	1.08
2337441--2337489	21	2.3	22	85	3	64	32	0	2	65	1.04
2338809--2338876	30	2.3	31	82	7	79	42	5	5	45	1.52
2353976--2354014	9	4.3	9	81	12	53	53	10	2	33	1.48
2354093--2354185	21	4.3	22	75	11	86	64	5	0	30	1.16
2354283--2354333	24	2.1	25	96	3	95	29	0	7	62	1.23
2354286--2354340	24	2.2	25	90	6	85	32	1	7	58	1.36
2359364--2359396	16	2.1	16	88	11	50	60	0	3	36	1.12
2360703--2360908	102	2.0	103	99	0	405	44	8	14	33	1.75
2361782--2361832	20	2.6	20	81	3	68	54	1	0	43	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2366824--2366953	50	2.6	51	81	3	138	24	18	26	30	1.98
2367408--2367458	25	2.0	25	88	0	75	21	17	23	37	1.94
2369280--2369321	20	2.1	20	86	0	57	47	0	7	45	1.30
2370881--2370913	17	1.9	17	100	0	66	66	3	0	30	1.06
2384484--2384585	48	2.1	48	87	0	141	27	34	20	17	1.95
2387234--2387275	19	2.3	18	91	4	66	64	0	7	28	1.20
2387921--2387952	13	2.4	14	94	5	57	75	0	0	25	0.81
2387920--2387954	14	2.5	15	86	13	56	74	0	0	25	0.82
2394801--2394845	18	2.5	19	89	7	67	75	4	15	4	1.12
2394812--2394845	6	5.5	6	86	6	50	79	2	14	2	0.97
2394837--2394897	26	2.2	27	80	8	70	62	3	26	8	1.39
2411194--2411233	21	1.9	21	84	0	53	25	10	15	50	1.74
2412942--2413049	38	2.8	38	78	0	99	25	22	23	29	1.99
2416964--2416999	16	2.1	17	90	10	56	19	0	0	80	0.71
2423616--2423661	23	2.0	23	82	4	56	50	17	10	21	1.77
2427296--2427411	38	3.0	38	82	1	124	26	25	21	26	1.99
2427386--2427467	36	2.2	36	80	4	83	29	25	19	25	1.99
2430457--2430529	8	8.4	9	71	23	59	42	1	0	56	1.08
2430453--2430531	19	3.9	20	79	17	65	43	1	0	55	1.07
2430458--2430531	5	15.4	5	74	23	70	41	1	0	56	1.07
2430458--2430531	17	4.4	17	79	14	75	41	1	0	56	1.07
2436322--2436355	16	2.1	16	88	0	50	35	20	0	44	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2442790--2442823	15	2.3	15	90	5	52	70	2	0	26	1.01
2443309--2443358	23	2.2	23	85	0	64	40	0	8	52	1.31
2448287--2448325	20	2.0	20	89	0	60	41	5	15	38	1.69
2452403--2452475	29	2.5	29	79	0	74	23	4	2	69	1.18
2452863--2452917	3	18.3	3	100	0	110	32	0	0	67	0.91
2452989--2453018	13	2.3	13	100	0	60	73	6	0	20	1.05
2453820--2453847	2	14.0	2	100	0	56	50	0	0	50	1.00
2460131--2460161	3	10.3	3	100	0	62	67	0	0	32	0.91
2465711--2465773	30	2.1	30	93	0	108	30	1	9	58	1.39
2465896--2465925	11	2.7	11	89	0	51	70	0	0	30	0.88
2468097--2468173	25	3.0	25	75	3	73	64	5	1	28	1.22
2468128--2468192	32	2.0	32	100	0	130	56	12	3	27	1.50
2468636--2468660	13	1.9	13	100	0	50	56	0	8	36	1.29
2470367--2470396	16	1.9	16	93	6	53	30	0	20	50	1.49
2479048--2479096	20	2.5	20	86	0	62	38	22	26	12	1.89
2482639--2482728	44	2.0	44	95	0	162	27	15	21	35	1.94
2490274--2490332	31	1.9	31	89	3	93	40	8	23	27	1.83
2490563--2490746	51	3.6	51	79	3	176	23	18	27	29	1.98
2490750--2490844	45	2.1	45	92	0	163	26	18	24	30	1.98
2492604--2492783	95	1.9	95	95	0	324	28	16	23	31	1.96
2493315--2493379	26	2.5	26	94	0	112	12	16	21	49	1.79
2501744--2501794	10	5.2	10	72	13	52	56	1	11	29	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2501728--2501822	29	3.4	28	73	13	79	57	1	11	29	1.41
2503806--2503856	14	3.4	14	78	19	50	21	1	29	47	1.62
2505070--2505103	17	1.9	17	88	5	50	58	20	2	17	1.51
2505560--2505603	12	3.7	12	78	0	52	63	6	4	25	1.38
2514035--2514076	21	1.9	21	85	9	57	35	4	4	54	1.42
2517372--2517404	16	2.1	16	100	0	66	33	30	0	36	1.58
2517375--2517410	16	2.3	16	90	4	56	27	33	0	38	1.57
2528937--2528963	14	1.9	14	100	0	54	66	0	0	33	0.92
2529933--2529992	29	2.1	29	93	0	102	41	20	10	28	1.84
2534161--2534276	55	2.1	55	93	0	196	34	15	12	37	1.85
2534763--2534881	61	2.0	61	94	0	211	30	13	10	45	1.78
2537633--2537673	19	2.2	19	86	0	55	19	4	2	73	1.13

Tables:   1   2   3   4   5   6   7   8

The End!