genome.fa.s1821.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold62
Parameters: 2 7 7 80 10 50 1000
Length:  1680050

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 510 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360--402	24	1.9	23	86	13	63	55	2	2	39	1.25
2607--2636	14	2.2	14	94	5	53	0	13	0	86	0.57
42062--42119	29	2.0	29	90	6	91	41	25	6	25	1.80
43808--43874	27	2.5	27	85	4	91	13	13	16	56	1.67
44017--44228	106	2.0	106	99	0	415	50	12	9	26	1.71
57105--57196	28	3.1	28	66	22	80	57	3	8	30	1.45
57099--57221	60	2.0	61	96	1	230	53	3	11	31	1.52
64001--64032	6	5.3	6	100	0	64	15	0	0	84	0.63
64002--64044	10	4.4	10	80	14	54	18	0	2	79	0.85
70482--70529	24	2.0	24	91	0	78	45	10	27	16	1.80
70619--70728	21	5.2	21	62	8	62	16	21	17	44	1.86
70621--70770	42	3.6	42	90	0	228	16	24	16	42	1.89
75660--75761	49	2.1	49	100	0	204	26	9	11	51	1.69
77274--77309	17	2.1	17	100	0	72	30	5	11	52	1.59
80022--80088	25	2.7	25	73	0	62	29	22	25	22	1.99
85690--86305	205	3.0	205	97	0	1142	28	15	17	38	1.90
88569--88733	39	4.2	39	87	3	233	24	25	27	21	1.99
88594--88750	78	2.0	78	84	0	206	25	24	27	22	2.00
96415--96439	13	1.9	13	100	0	50	48	4	0	48	1.20
102875--102901	2	13.5	2	100	0	54	48	0	0	51	1.00
104382--104420	17	2.2	17	86	9	51	61	2	2	33	1.23
104382--104419	18	2.1	19	85	5	51	63	2	2	31	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118182--118326	65	2.2	65	97	0	272	24	11	19	44	1.83
118473--118614	60	2.4	60	86	5	193	30	20	9	38	1.85
119066--119103	20	1.9	20	94	0	67	28	10	28	31	1.90
119512--119550	16	2.4	16	82	0	51	10	0	35	53	1.35
119592--119866	125	2.2	124	91	0	451	28	16	24	30	1.96
120175--120214	21	2.0	21	90	5	64	52	0	5	42	1.23
120811--120836	2	13.0	2	100	0	52	50	0	0	50	1.00
121549--121601	19	2.8	19	82	2	72	28	7	0	64	1.21
127569--127629	19	3.2	19	71	15	54	47	3	1	47	1.28
127562--127643	39	2.1	39	82	6	96	50	3	1	45	1.27
127611--128267	328	2.0	329	99	0	1307	41	8	10	40	1.70
129565--129830	53	5.0	53	97	0	487	26	16	18	38	1.92
130560--130859	149	2.0	149	90	0	474	26	15	18	39	1.90
137187--137223	17	2.1	18	90	5	58	48	2	5	43	1.40
137285--137317	11	3.1	11	86	4	50	69	18	0	12	1.18
139277--139309	11	3.1	11	86	4	50	69	18	0	12	1.18
141003--141040	17	2.4	16	83	12	51	60	0	0	39	0.97
141082--141125	21	2.1	21	82	0	52	70	9	4	15	1.30
149218--149278	28	2.3	27	88	5	88	39	9	0	50	1.35
154790--154848	29	2.0	29	81	12	68	47	15	5	32	1.67
165467--165505	20	1.9	21	85	15	55	53	0	0	46	1.00
166851--166875	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167922--167961	6	6.2	6	86	13	53	0	20	2	77	0.88
170645--170669	6	4.2	6	100	0	50	84	0	16	0	0.63
171188--171231	21	2.1	21	86	0	61	27	34	9	29	1.87
191731--191771	18	2.3	18	82	0	55	41	0	4	53	1.22
197693--197747	27	2.0	28	96	3	103	27	3	0	69	1.05
197699--197757	27	2.2	27	82	8	68	25	3	5	66	1.28
206982--207008	2	13.5	2	100	0	54	51	0	0	48	1.00
207487--207518	13	2.4	14	94	5	57	40	0	0	59	0.97
216691--216746	29	1.9	29	85	7	78	42	14	5	37	1.68
218430--218476	19	2.4	19	86	10	60	25	8	0	65	1.20
219776--219809	15	2.3	15	89	0	50	58	5	2	32	1.37
222483--222522	18	2.2	18	86	4	53	65	2	0	32	1.06
222581--222628	20	2.5	19	80	12	62	56	14	0	29	1.39
222621--222677	17	3.3	16	75	7	51	64	0	5	29	1.15
223801--223854	4	13.5	4	100	0	108	50	24	0	25	1.50
223873--223906	3	11.3	3	87	0	50	26	0	0	73	0.83
224218--224285	34	2.0	34	100	0	136	29	20	5	44	1.75
238491--238518	10	2.8	10	100	0	56	0	28	64	7	1.20
247462--247486	13	1.9	13	100	0	50	40	12	0	48	1.40
251899--251966	32	2.1	32	100	0	136	22	11	16	50	1.77
252375--252431	26	2.2	26	96	0	105	7	17	19	56	1.64
255179--255229	3	16.7	3	87	4	75	31	0	1	66	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255257--255305	23	2.2	22	81	3	53	71	8	18	2	1.21
256476--256545	2	36.0	2	80	11	65	45	0	5	48	1.26
261726--261761	18	2.0	18	88	0	54	27	0	16	55	1.42
262989--263244	130	1.9	132	87	4	372	28	19	12	39	1.89
268821--268866	23	1.9	24	83	16	60	54	0	19	26	1.44
272540--272573	14	2.2	16	90	10	54	52	0	0	47	1.00
272513--272588	37	2.1	37	82	9	93	55	1	1	42	1.16
282436--282472	19	2.0	18	89	5	56	62	0	5	32	1.18
283952--284016	31	2.2	31	86	5	89	33	13	15	36	1.87
290702--290728	10	2.7	10	100	0	54	25	0	0	74	0.83
292390--292424	15	2.2	17	90	10	56	14	0	5	80	0.89
297198--297273	36	2.2	34	83	9	91	52	1	6	39	1.36
297335--297373	15	2.6	15	87	0	51	43	2	0	53	1.14
297575--297608	7	4.9	7	100	0	68	73	0	0	26	0.83
303055--303244	93	2.0	94	98	1	373	46	11	7	34	1.68
313014--313060	2	24.0	2	82	4	60	48	2	46	2	1.25
322115--322160	22	2.1	22	91	0	74	47	15	2	34	1.57
323395--323471	25	3.2	25	83	8	81	18	24	18	38	1.92
323408--323497	22	4.0	22	85	4	108	18	22	18	40	1.92
329964--329989	5	5.2	5	100	0	52	61	0	0	38	0.96
337510--337556	3	15.7	3	90	0	76	36	2	0	61	1.08
338054--338084	12	2.6	12	94	0	53	77	3	19	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341108--341242	57	2.3	61	85	12	183	31	22	23	22	1.99
343488--343515	14	2.0	14	100	0	56	42	0	7	50	1.30
344239--344286	20	2.3	22	79	13	57	27	10	0	62	1.27
344311--344353	22	2.0	22	90	9	70	27	4	2	65	1.25
344547--344598	17	2.9	17	80	5	59	17	11	0	71	1.15
344553--344625	17	4.2	17	80	11	69	17	13	2	65	1.38
344572--344641	5	13.4	5	76	16	63	18	18	2	60	1.49
344554--344632	41	1.9	42	89	2	124	18	15	2	63	1.42
344572--344641	17	4.4	16	78	10	74	18	18	2	60	1.49
344713--344810	5	17.4	5	73	21	52	30	15	0	54	1.42
344713--344810	28	3.2	28	76	17	106	30	15	0	54	1.42
345133--345190	11	5.6	10	82	13	73	17	18	1	62	1.42
345133--345190	5	11.2	5	83	12	73	17	18	1	62	1.42
345213--345401	26	8.0	21	69	22	92	26	16	0	56	1.44
345213--345468	48	5.4	47	87	7	324	24	16	1	58	1.45
345206--345295	21	4.0	21	75	19	76	26	16	0	56	1.40
345310--345394	27	3.4	27	64	18	65	25	11	1	61	1.38
345365--345479	21	5.5	20	73	18	76	22	12	1	63	1.37
351139--351191	23	2.3	23	83	6	63	58	3	1	35	1.27
358681--358952	136	2.0	135	96	0	499	33	16	18	31	1.93
359468--359788	152	2.1	150	86	3	430	32	23	14	30	1.93
361742--361771	13	2.3	13	94	0	51	23	23	6	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
368266--368331	31	2.1	31	86	5	89	30	19	24	25	1.98
368266--368488	93	2.4	91	79	6	243	34	17	23	23	1.96
384116--384835	359	2.0	360	99	0	1433	35	14	13	36	1.86
385856--385898	22	2.0	22	81	9	52	34	13	4	46	1.65
386862--386897	17	2.1	18	90	10	58	61	0	2	36	1.11
387664--387729	30	2.2	30	100	0	132	31	9	0	59	1.29
388188--388254	34	1.9	35	88	8	102	46	11	8	32	1.72
388223--388262	14	2.9	14	82	14	55	42	12	7	37	1.71
391219--391255	17	2.1	19	90	10	60	54	16	0	29	1.43
398288--398389	49	2.1	49	83	10	129	30	18	24	26	1.98

Tables:   1   2   3   4   5