genome.fa.s1821.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold62
Parameters: 2 7 7 80 10 50 1000
Length:  1680050

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 510 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399396--399474	41	1.9	41	94	0	140	48	10	7	34	1.65
399800--399863	30	2.1	30	82	5	76	46	20	7	25	1.77
403291--403330	20	2.0	20	85	5	53	45	0	2	52	1.14
403287--403358	31	2.2	32	81	18	80	41	0	1	56	1.07
403844--403889	20	2.3	20	78	14	51	45	19	4	30	1.70
413375--413459	38	2.2	38	87	6	118	64	0	5	29	1.17
416417--416446	5	6.0	5	96	0	51	63	0	36	0	0.95
418360--418449	25	3.6	25	95	0	153	15	22	22	40	1.91
418587--418657	24	2.9	24	70	15	65	16	22	23	36	1.94
420967--421041	31	2.5	29	81	10	80	28	14	10	46	1.78
423468--423538	31	2.3	31	80	7	81	42	11	9	36	1.74
427036--427061	2	13.0	2	100	0	52	50	0	0	50	1.00
427114--427139	2	13.0	2	100	0	52	50	0	0	50	1.00
427026--427184	78	2.0	79	98	1	311	45	10	11	33	1.74
437223--437276	15	3.7	15	77	5	65	12	1	11	74	1.16
438113--438161	22	2.1	22	88	7	71	12	34	24	28	1.91
445175--445514	68	5.0	68	100	0	680	38	2	13	45	1.58
446963--447025	33	1.9	33	90	0	99	41	12	11	34	1.79
458543--458599	22	2.6	23	78	13	66	38	26	10	24	1.88
459974--460015	17	2.4	18	88	4	59	45	4	2	47	1.36
471273--471316	3	14.7	3	90	0	70	4	0	61	34	1.16
474059--474093	18	1.9	18	88	0	52	51	5	5	37	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
477751--478123	183	2.0	185	98	1	732	39	10	9	40	1.72
483331--483370	21	1.9	21	89	0	62	62	0	0	37	0.95
483331--483380	21	2.3	21	82	3	55	64	0	4	32	1.12
491803--491836	18	1.9	18	88	5	52	38	0	41	20	1.53
497814--497870	24	2.3	25	80	17	66	40	15	17	26	1.90
497835--497880	24	1.9	24	90	0	74	41	15	19	23	1.89
498058--498130	23	3.1	24	78	5	60	30	16	24	28	1.96
499316--499374	15	3.8	15	72	14	57	45	3	1	49	1.28
499309--499403	31	3.1	31	84	4	113	43	3	2	51	1.29
499961--499992	10	3.3	10	95	4	57	0	6	0	93	0.34
499961--499990	15	1.9	16	93	6	53	0	6	0	93	0.35
510022--510048	13	2.1	13	100	0	54	40	0	0	59	0.98
509962--510210	112	2.2	112	100	0	498	51	2	9	36	1.47
510134--510160	13	2.1	13	100	0	54	40	0	0	59	0.98
513844--514184	46	7.3	46	87	7	494	29	22	14	33	1.94
513864--514184	91	3.4	92	90	5	495	30	21	14	33	1.93
516699--516833	11	12.7	11	68	18	58	45	4	0	49	1.22
516736--516775	20	2.1	19	86	13	55	47	2	0	50	1.14
520885--520913	2	15.0	2	92	7	51	51	0	0	48	1.00
535283--535363	26	3.2	26	63	10	69	43	1	6	49	1.35
535267--535364	49	2.0	49	97	0	187	41	2	8	47	1.44
535281--535358	23	3.3	23	66	22	61	44	1	6	47	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
535382--535411	14	2.2	14	94	5	53	36	0	3	60	1.14
535347--535489	71	2.0	72	98	1	279	36	4	9	49	1.55
535453--535482	14	2.2	14	94	5	53	36	0	3	60	1.14
536078--536106	11	2.6	11	100	0	58	48	0	0	51	1.00
536092--536135	19	2.3	19	92	4	70	31	0	2	65	1.05
540158--540700	270	2.0	271	99	0	1079	42	9	8	38	1.69
546497--546529	2	17.5	2	87	12	52	45	0	0	54	0.99
546494--546531	12	3.5	11	89	10	60	44	0	0	55	0.99
546841--546872	7	4.6	7	100	0	64	87	0	0	12	0.54
547738--547775	17	2.1	19	85	9	53	73	0	0	26	0.83
558546--558605	29	2.1	29	84	12	79	28	20	5	46	1.71
561091--561123	16	2.1	16	88	5	50	27	21	18	33	1.96
574395--574419	11	2.3	11	100	0	50	32	0	36	32	1.58
579649--579689	16	2.6	16	80	3	57	58	0	0	41	0.98
579670--581523	927	2.0	927	100	0	3708	33	16	15	34	1.90
582591--583188	298	2.0	299	99	0	1189	45	11	9	34	1.72
587483--587544	31	2.0	31	100	0	124	51	19	9	19	1.74
590280--590325	25	1.9	25	91	8	78	39	0	2	58	1.10
590312--590358	24	2.0	24	83	8	60	38	0	0	61	0.96
590333--590640	151	2.0	152	99	0	609	43	7	20	28	1.78
596024--596145	42	2.9	42	80	0	127	15	24	16	43	1.87
598237--598280	21	2.0	22	82	4	54	52	2	2	43	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
598883--598923	20	2.1	19	86	13	57	46	4	7	41	1.53
613658--613722	29	2.2	29	76	10	69	56	7	6	29	1.51
613753--613793	21	2.0	21	85	9	57	63	0	2	34	1.08
613751--613793	11	4.0	11	79	14	54	62	0	2	34	1.08
613690--613884	9	21.4	9	67	20	70	63	3	3	30	1.27
613813--613884	24	3.2	24	72	16	64	70	2	1	25	1.08
613839--613894	27	2.0	28	83	16	73	67	1	3	26	1.16
616667--616708	10	4.2	10	76	11	50	59	7	0	33	1.25
616665--616710	11	4.5	11	78	10	53	58	6	0	34	1.24
626368--626398	9	3.4	9	90	0	53	38	22	12	25	1.90
640207--640261	24	2.2	25	84	9	69	38	3	40	18	1.68
657808--657842	16	2.3	15	90	5	52	71	2	0	25	1.00
660301--660335	18	2.0	17	88	5	52	65	5	0	28	1.15
667669--667855	97	1.9	98	87	3	279	52	11	13	21	1.72
667912--667994	42	2.0	42	92	0	139	45	21	6	26	1.75
668152--668264	42	2.7	42	84	2	147	46	18	7	28	1.75
673802--673857	22	2.4	23	79	8	60	28	0	5	66	1.14
680744--680787	23	1.9	23	85	0	61	72	9	2	15	1.19
680823--680861	13	2.9	14	84	7	53	51	7	2	38	1.44
680826--680870	14	3.3	14	84	3	56	44	6	6	42	1.57
680828--680872	13	3.4	13	84	6	54	46	6	6	40	1.56
683936--683968	12	2.8	12	90	0	57	0	9	0	90	0.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
683936--683967	6	5.7	6	92	7	50	0	9	0	90	0.45
694739--694817	37	2.1	38	88	6	117	27	10	32	29	1.89
694777--694877	51	2.0	51	96	0	184	23	15	33	26	1.95
697994--698054	23	2.7	23	71	19	63	40	8	4	45	1.55
702488--702525	10	3.9	10	79	6	51	47	0	0	52	1.00
702490--702528	19	2.1	19	100	0	78	51	0	0	48	1.00
702902--702962	30	2.0	30	96	0	113	44	18	3	34	1.66
712830--712869	5	8.4	5	84	15	50	82	15	2	0	0.77
713857--713883	3	9.0	3	100	0	54	33	0	33	33	1.58
720909--720947	19	2.1	19	85	0	51	46	2	5	46	1.38
729533--729589	22	2.5	23	72	16	57	66	3	3	26	1.24
735958--736046	44	2.0	44	91	4	144	46	4	8	40	1.56
739227--739295	31	2.4	27	83	11	75	39	10	13	37	1.78
741821--741856	18	2.0	18	88	0	54	27	5	11	55	1.57
749288--749331	23	1.9	23	90	0	70	34	0	0	65	0.93
749285--749354	26	2.9	22	76	15	61	30	1	1	67	1.08
756169--756224	21	2.5	22	77	8	60	39	1	3	55	1.28
758025--758066	20	2.1	20	95	0	75	45	0	0	54	0.99
759012--759236	111	2.0	112	99	0	443	24	22	24	28	2.00
760037--760066	16	1.9	15	93	6	51	13	0	33	53	1.40
760052--760116	29	2.2	29	88	0	94	35	0	21	43	1.53
760068--760126	29	2.0	30	90	3	93	37	0	15	47	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
761331--761390	28	2.1	28	84	3	75	36	0	18	45	1.50
762811--762854	8	5.2	8	80	20	54	70	2	0	27	0.99
762447--763262	450	1.8	447	82	3	1048	34	11	12	41	1.79
764811--764835	5	5.0	5	100	0	50	20	0	0	80	0.72
770204--770272	34	2.0	34	100	0	138	42	17	5	34	1.73
770909--770951	11	4.0	11	84	3	61	2	0	30	67	1.03
770909--770951	22	2.0	21	90	4	68	2	0	30	67	1.03
773048--773091	21	2.0	22	83	12	56	45	0	4	50	1.22
773711--773772	31	1.9	33	87	6	92	75	9	0	14	1.03
774084--774162	24	3.2	23	81	16	79	74	7	11	6	1.21

Tables:   1   2   3   4   5