genome.fa.s1912.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold136
Parameters: 2 7 7 80 10 50 1000
Length:  1085849

Tables:   1   2   3   4   

This is table  2  of  4  ( 399 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327084--327364	27	10.4	27	83	0	274	25	14	19	40	1.90
330522--330978	233	2.0	233	96	0	842	24	25	25	24	2.00
333195--333412	32	6.8	32	76	6	199	37	22	19	20	1.94
333210--333412	64	3.2	64	83	5	268	37	23	19	19	1.94
333196--333412	96	2.3	96	78	7	226	37	22	19	20	1.94
333703--333807	27	3.9	27	83	6	88	18	19	22	40	1.92
333731--333990	27	9.6	27	84	2	272	21	15	20	42	1.89
333731--333990	54	4.8	54	84	2	308	21	15	20	42	1.89
336982--337035	20	2.6	21	79	5	65	22	24	33	20	1.97
337050--337101	21	2.5	20	76	14	52	19	25	36	19	1.95
345730--345767	15	2.5	15	84	12	51	44	0	7	47	1.32
352950--353035	42	2.0	42	100	0	172	43	23	9	24	1.83
365871--365926	27	2.1	27	86	0	76	23	17	23	35	1.95
371620--371676	20	2.7	22	78	15	66	28	29	26	15	1.96
373970--374079	30	3.7	30	74	4	98	42	14	21	20	1.88
376727--376764	18	2.1	18	85	9	51	26	34	18	21	1.96
380731--380835	43	2.4	43	76	9	106	23	17	26	32	1.96
383506--383562	27	2.1	27	84	12	73	31	24	24	19	1.98
383637--383738	24	4.3	24	81	2	98	42	25	9	22	1.84
383648--383743	24	4.0	24	81	9	108	41	25	9	23	1.84
383784--383959	27	6.6	26	76	7	140	20	17	18	44	1.87
383784--383959	80	2.2	81	82	9	200	20	17	18	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383850--383979	53	2.4	53	84	3	145	20	17	20	41	1.90
383784--383980	27	7.3	27	75	7	134	20	16	18	43	1.88
392718--392894	44	4.0	44	100	0	354	41	18	18	22	1.90
393934--394020	42	2.1	42	84	4	113	27	6	21	43	1.78
413650--413838	29	6.4	29	79	11	170	36	12	25	24	1.91
413650--413838	58	3.2	58	77	5	209	36	12	25	24	1.91
413707--413911	29	7.0	29	76	8	128	37	14	25	22	1.92
413679--413960	118	2.4	118	80	3	291	35	13	27	23	1.92
413827--413924	29	3.3	29	91	4	153	39	14	29	16	1.88
415988--416184	52	3.8	52	99	0	385	40	16	10	31	1.83
430750--430781	17	1.9	16	93	6	55	25	18	28	28	1.98
434157--434186	2	15.0	2	100	0	60	50	0	0	50	1.00
442097--442348	40	6.3	40	79	7	253	17	30	16	34	1.92
442097--442294	79	2.5	80	85	2	247	18	30	15	35	1.92
442114--442341	20	11.4	20	63	7	79	17	30	17	35	1.92
443843--443876	7	4.7	7	96	3	59	41	14	0	44	1.45
447182--447331	39	3.8	39	90	0	228	31	33	22	13	1.92
447774--447912	29	4.8	29	78	8	140	20	15	26	37	1.93
447772--447938	87	1.9	85	81	6	201	19	14	27	38	1.91
447907--448072	29	5.8	29	82	6	160	22	14	21	40	1.90
447889--448071	58	3.2	57	77	8	192	21	14	22	42	1.88
447936--448095	87	1.8	86	80	6	189	25	16	19	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451176--451203	13	2.2	13	100	0	56	28	0	0	71	0.86
453341--453389	18	2.7	18	83	0	71	30	8	18	42	1.79
454188--454235	14	3.2	16	77	14	57	4	18	2	75	1.07
455256--455326	26	2.6	27	80	8	81	42	7	0	50	1.29
459157--459208	24	2.2	24	85	0	68	50	7	3	38	1.50
459733--460318	196	3.0	195	92	1	958	29	21	17	31	1.96
463499--463550	24	2.2	24	89	0	77	51	5	3	38	1.44
464235--464298	17	3.9	17	75	19	64	37	6	9	46	1.61
464219--464292	32	2.3	32	86	4	96	39	8	6	45	1.60
464235--464300	32	2.1	32	94	0	114	37	6	9	46	1.60
464407--464488	40	2.0	41	88	4	121	45	2	10	41	1.53
471685--471734	21	2.4	20	77	9	55	26	10	16	48	1.77
476265--476529	97	2.7	96	94	1	458	39	1	17	41	1.61
476833--476910	40	1.9	41	84	5	104	25	26	25	21	2.00
480906--480961	28	2.0	28	85	0	76	35	16	35	12	1.86
486014--486039	12	2.2	12	100	0	52	30	0	46	23	1.53
487661--487702	12	3.5	12	80	0	57	52	14	19	14	1.75
504791--505553	132	5.8	132	92	0	1213	29	19	24	26	1.99
504792--505503	44	16.2	44	64	9	207	29	19	24	26	1.99
504791--505547	395	1.9	396	92	0	1264	29	19	24	26	1.98
512463--512518	28	2.0	28	85	0	76	35	16	35	12	1.86
514627--514671	21	2.1	22	83	4	56	15	6	6	71	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
521303--521353	23	2.2	24	80	13	61	58	21	1	17	1.48
521838--521895	29	2.0	30	82	3	73	48	10	6	34	1.64
529486--529537	19	2.7	20	81	6	61	44	5	1	48	1.38
531384--531501	57	2.1	57	96	0	218	33	19	12	33	1.90
540785--540816	3	10.7	3	100	0	64	31	0	0	68	0.90
545126--545195	24	3.0	23	76	14	63	27	2	1	68	1.12
553959--554654	349	2.0	349	88	1	1038	30	17	24	26	1.97
558195--558390	44	4.4	44	78	1	212	29	18	23	28	1.98
558219--558383	44	3.7	44	81	1	213	31	16	24	27	1.96
558195--558390	89	2.2	89	97	0	365	29	18	23	28	1.98
558628--558715	44	2.0	44	86	2	122	29	15	26	28	1.96
560155--560224	24	3.0	23	76	14	63	27	2	1	68	1.12
560529--560721	95	2.0	95	96	0	359	31	7	6	54	1.54
567415--567472	19	2.7	22	84	10	68	36	8	17	37	1.80
569310--569371	11	5.8	11	73	21	51	33	1	0	64	1.03
569373--569410	11	3.5	11	92	7	60	42	7	0	50	1.31
569313--569436	51	2.4	50	82	9	133	37	3	0	59	1.13
569323--569435	11	10.9	10	72	16	54	37	3	0	59	1.15
569921--569962	18	2.3	19	80	8	52	47	9	7	35	1.64
573914--574077	82	2.1	78	82	6	195	23	17	20	38	1.93
573914--574077	41	4.1	40	78	10	165	23	17	20	38	1.93
582249--582366	41	2.9	42	87	5	152	27	18	24	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
584009--584172	82	2.1	78	82	6	195	23	17	20	38	1.93
584009--584172	41	4.1	40	78	10	165	23	17	20	38	1.93
586857--587201	124	2.8	124	90	0	548	30	15	21	32	1.94
608982--609022	21	2.0	21	95	0	73	53	14	12	19	1.72
614187--614302	58	2.0	59	86	1	162	27	18	6	46	1.75
615046--615152	56	1.9	56	90	0	169	11	21	20	46	1.81
615046--615152	28	3.8	28	87	0	151	11	21	20	46	1.81
617977--618002	13	2.0	13	100	0	52	46	15	7	30	1.74
630914--630948	14	2.5	14	85	0	52	62	5	0	31	1.18
633187--633248	32	2.0	31	93	3	106	32	22	6	38	1.80
651243--651722	173	2.8	173	88	1	694	28	18	25	27	1.98
651300--651716	44	9.6	44	69	10	173	28	18	24	28	1.98
652052--652103	28	1.9	26	92	7	86	46	0	7	46	1.31
653751--653883	41	3.2	41	90	4	205	24	21	24	29	1.99
662836--662865	14	2.1	14	100	0	60	33	20	33	13	1.91
670829--670862	18	2.0	18	88	11	54	64	5	0	29	1.17
677293--677429	40	3.4	40	73	6	125	40	19	18	21	1.92
677461--677581	42	2.9	41	90	2	179	20	19	29	29	1.97
677934--677976	14	2.9	15	86	6	61	23	0	37	39	1.55
677991--678055	22	2.9	22	77	11	60	30	1	33	33	1.67
678186--678237	14	3.7	14	84	0	68	21	0	32	46	1.52
679942--679975	12	2.7	13	86	4	52	23	5	8	61	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
680475--680544	23	3.0	23	79	4	95	18	14	24	42	1.87
680612--680654	14	3.3	14	78	18	56	34	6	11	46	1.67
684557--684655	43	2.3	43	82	5	130	26	16	29	28	1.97
687506--687569	32	2.0	32	81	6	76	59	3	1	35	1.23
694859--694901	23	1.9	23	86	13	63	30	32	0	37	1.58
698520--698607	43	2.0	43	97	0	167	39	14	14	30	1.87
699290--699366	37	2.1	37	100	0	154	50	2	22	24	1.61
700503--700571	22	3.1	22	79	8	86	18	20	15	44	1.86
702883--702928	20	2.4	19	79	13	58	36	0	0	63	0.95
702895--702928	14	2.2	16	90	10	54	35	0	0	64	0.94

Tables:   1   2   3   4